U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

fmr1 fragile X messenger ribonucleoprotein 1 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111226494, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
fmr1
Gene description
fragile X messenger ribonucleoprotein 1
See related
Ensembl:ENSSDUG00000013947
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174416.1 (6013803..6026123, complement)

NW_019174416.1Genomic Context describing neighboring genes Neighboring gene iduronate 2-sulfatase Neighboring gene AF4/FMR2 family, member 2 Neighboring gene matrix-remodeling-associated protein 5-like Neighboring gene RAB33A, member RAS oncogene family

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_019174416 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 3'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein homodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA damage response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in anterograde axonal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in central nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of dendrite morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of dendritic spine development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of filopodium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA stability IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of modification of synaptic structure IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of translation at postsynapse, modulating synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendritic filopodium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendritic spine IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendritic spine neck IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in growth cone IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal ribonucleoprotein granule IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in postsynaptic density IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
synaptic functional regulator FMR1
Names
FMRP translational regulator 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174416.1 Reference Sdu_1.0 Primary Assembly

    Range
    6013803..6026123 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022751676.1 → XP_022607397.1  synaptic functional regulator FMR1 isoform X2

    Conserved Domains (4) summary
    smart00322
    Location:197 → 256
    KH; K homology RNA-binding domain
    pfam00013
    Location:261 → 333
    KH_1; KH domain
    pfam12235
    Location:336 → 466
    FXMRP1_C_core; Fragile X-related 1 protein core C terminal
    pfam16098
    Location:492 → 583
    FXMR_C2; Fragile X-related mental retardation protein C-terminal region 2

  2. XM_022751675.1 → XP_022607396.1  synaptic functional regulator FMR1 isoform X1

    Related
    ENSSDUP00000019103.1, ENSSDUT00000019447.1
    Conserved Domains (5) summary
    smart00322
    Location:221 → 280
    KH; K homology RNA-binding domain
    pfam00013
    Location:285 → 357
    KH_1; KH domain
    pfam05641
    Location:63 → 117
    Agenet; Agenet domain
    pfam12235
    Location:360 → 490
    FXMRP1_C_core; Fragile X-related 1 protein core C terminal
    pfam16098
    Location:516 → 607
    FXMR_C2; Fragile X-related mental retardation protein C-terminal region 2
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.