U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

cdh13 cadherin 13, H-cadherin (heart) [ Seriola dumerili (greater amberjack) ]

Gene ID: 111225181, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
cdh13
Gene description
cadherin 13, H-cadherin (heart)
See related
Ensembl:ENSSDUG00000022006
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174402.1 (2194769..2492801)

NW_019174402.1Genomic Context describing neighboring genes Neighboring gene TP53 induced glycolysis regulatory phosphatase a Neighboring gene cyclin D2, a Neighboring gene DNA topoisomerase I, mitochondrial-like Neighboring gene malonyl-CoA decarboxylase

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_019174402 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in adherens junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sprouting angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catenin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
cadherin-13

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174402.1 Reference Sdu_1.0 Primary Assembly

    Range
    2194769..2492801
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022749887.1 → XP_022605608.1  cadherin-13 isoform X1

    UniProtKB/TrEMBL
    A0A3B4VIZ0
    Related
    ENSSDUP00000030554.1, ENSSDUT00000031082.1
    Conserved Domains (5) summary
    cd11304
    Location:486 → 586
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:186 → 248
    CA; Cadherin repeats
    pfam00028
    Location:255 → 343
    Cadherin; Cadherin domain
    cl07391
    Location:30 → 115
    Cadherin_pro; Cadherin prodomain like
    cl09101
    Location:594 → 685
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus

  2. XM_022749888.1 → XP_022605609.1  cadherin-13 isoform X2

    UniProtKB/TrEMBL
    A0A3B4VHX1
    Related
    ENSSDUP00000030563.1, ENSSDUT00000031091.1
    Conserved Domains (5) summary
    cd11304
    Location:486 → 586
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:186 → 248
    CA; Cadherin repeats
    pfam00028
    Location:255 → 343
    Cadherin; Cadherin domain
    cl07391
    Location:30 → 115
    Cadherin_pro; Cadherin prodomain like
    cl09101
    Location:594 → 685
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.