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kmt5b lysine methyltransferase 5B [ Seriola dumerili (greater amberjack) ]

Gene ID: 111224033, updated on 15-Mar-2024

Summary

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Gene symbol
kmt5b
Gene description
lysine methyltransferase 5B
See related
Ensembl:ENSSDUG00000020097
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174266.1 (4424035..4434134)

NW_019174266.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L12 Neighboring gene polymerase (DNA directed), epsilon 3 (p17 subunit) Neighboring gene CD82 antigen-like Neighboring gene cyclin B2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174266 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H4K20 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase KMT5B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174266.1 Reference Sdu_1.0 Primary Assembly

    Range
    4424035..4434134
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022748410.1 → XP_022604131.1  histone-lysine N-methyltransferase KMT5B

    UniProtKB/TrEMBL
    A0A3B4VAD5, A0A3B4VAG5
    Conserved Domains (1) summary
    smart00317
    Location:183 → 294
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

  2. XM_022748401.1 → XP_022604122.1  histone-lysine N-methyltransferase KMT5B

    UniProtKB/TrEMBL
    A0A3B4VAD5, A0A3B4VAG5
    Related
    ENSSDUP00000027801.1, ENSSDUT00000028292.1
    Conserved Domains (1) summary
    smart00317
    Location:183 → 294
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

  3. XM_022748426.1 → XP_022604147.1  histone-lysine N-methyltransferase KMT5B

    UniProtKB/TrEMBL
    A0A3B4VAD5, A0A3B4VAG5
    Related
    ENSSDUP00000027793.1, ENSSDUT00000028282.1
    Conserved Domains (1) summary
    smart00317
    Location:183 → 294
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

  4. XM_022748418.1 → XP_022604139.1  histone-lysine N-methyltransferase KMT5B

    UniProtKB/TrEMBL
    A0A3B4VAD5, A0A3B4VAG5
    Conserved Domains (1) summary
    smart00317
    Location:183 → 294
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

  5. XM_022748435.1 → XP_022604156.1  histone-lysine N-methyltransferase KMT5B

    UniProtKB/TrEMBL
    A0A3B4VAD5, A0A3B4VAG5
    Conserved Domains (1) summary
    smart00317
    Location:183 → 294
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
Nucleotide Protein
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