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pcsk1 proprotein convertase subtilisin/kexin type 1 [ Seriola dumerili (greater amberjack) ]

Gene ID: 111221841, updated on 15-Mar-2024

Summary

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Gene symbol
pcsk1
Gene description
proprotein convertase subtilisin/kexin type 1
See related
Ensembl:ENSSDUG00000022434
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Orthologs
human zebrafish all
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Genomic context

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See pcsk1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174343.1 (10142562..10161557)

NW_019174343.1Genomic Context describing neighboring genes Neighboring gene CD8a molecule Neighboring gene calpastatin Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 pseudogene Neighboring gene elongation factor for RNA polymerase II 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174343 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuroendocrine convertase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174343.1 Reference Sdu_1.0 Primary Assembly

    Range
    10142562..10161557
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022745424.1 → XP_022601145.1  neuroendocrine convertase 1 isoform X2

    UniProtKB/TrEMBL
    A0A3B4VKW6
    Conserved Domains (4) summary
    cd04059
    Location:47 → 341
    Peptidases_S8_Protein_convertases_Kexins_Furin-lik; Peptidase S8 family domain in Protein convertases
    pfam01483
    Location:430 → 517
    P_proprotein; Proprotein convertase P-domain
    pfam12177
    Location:664 → 700
    Proho_convert; Prohormone convertase enzyme
    pfam16470
    Location:2 → 32
    S8_pro-domain; Peptidase S8 pro-domain

  2. XM_022745423.1 → XP_022601144.1  neuroendocrine convertase 1 isoform X1

    UniProtKB/TrEMBL
    A0A3B4VKW6
    Related
    ENSSDUP00000031207.1, ENSSDUT00000031743.1
    Conserved Domains (4) summary
    cd04059
    Location:128 → 422
    Peptidases_S8_Protein_convertases_Kexins_Furin-lik; Peptidase S8 family domain in Protein convertases
    pfam01483
    Location:511 → 598
    P_proprotein; Proprotein convertase P-domain
    pfam12177
    Location:745 → 781
    Proho_convert; Prohormone convertase enzyme
    pfam16470
    Location:37 → 113
    S8_pro-domain; Peptidase S8 pro-domain
Nucleotide Protein
Heading Accession and Version

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