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socs5b suppressor of cytokine signaling 5b [ Seriola dumerili (greater amberjack) ]

Gene ID: 111220558, updated on 15-Mar-2024

Summary

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Gene symbol
socs5b
Gene description
suppressor of cytokine signaling 5b
See related
Ensembl:ENSSDUG00000000213
Gene type
protein coding
RefSeq status
MODEL
Organism
Seriola dumerili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Carangidae; Seriola
Also known as
socs5
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Sdu_1.0 (GCF_002260705.1) Unplaced Scaffold NW_019174328.1 (3893830..3905436)

NW_019174328.1Genomic Context describing neighboring genes Neighboring gene mix-type homeobox gene 1 Neighboring gene ras homolog family member Q Neighboring gene GTP cyclohydrolase 1-like Neighboring gene PROP paired-like homeobox 1 Neighboring gene multiple coagulation factor deficiency 2, ER cargo receptor complex subunit Neighboring gene tetratricopeptide repeat domain 7A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019174328 Unplaced Scaffold Reference Sdu_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Whole Genome Sequencing of Greater Amberjack (Seriola dumerili) for SNP Identification on Aligned Scaffolds and Genome Structural Variation Analysis Using Parallel Resequencing. Araki K, et al. Int J Genomics, 2018. PMID 29785397, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of phosphatidylinositol 3-kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
suppressor of cytokine signaling 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Seriola dumerili Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sdu_1.0 Primary Assembly

Genomic

  1. NW_019174328.1 Reference Sdu_1.0 Primary Assembly

    Range
    3893830..3905436
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022743663.1 → XP_022599384.1  suppressor of cytokine signaling 5

    UniProtKB/TrEMBL
    A0A3B4T209
    Related
    ENSSDUP00000000166.1, ENSSDUT00000000199.1
    Conserved Domains (3) summary
    pfam12610
    Location:144 → 197
    SOCS; Suppressor of cytokine signalling
    cl02533
    Location:505 → 561
    SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...
    cl15255
    Location:396 → 496
    SH2; Src homology 2 (SH2) domain
Nucleotide Protein
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