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PAX5 paired box 5 [ Delphinapterus leucas (beluga whale) ]

Gene ID: 111187965, updated on 15-Mar-2024

Summary

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Gene symbol
PAX5
Gene description
paired box 5
See related
Ensembl:ENSDLEG00000015164
Gene type
protein coding
RefSeq status
MODEL
Organism
Delphinapterus leucas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Delphinapterus
Orthologs
human mouse all
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Genomic context

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See PAX5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ASM228892v3 (GCF_002288925.2) Unplaced Scaffold NW_022098042.1 (9079954..9271568)
100 previous assembly ASM228892v2 (GCF_002288925.1) Unplaced Scaffold NW_019160921.1 (8982384..9173996)

NW_022098042.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L23a pseudogene Neighboring gene glyoxylate and hydroxypyruvate reductase Neighboring gene zinc finger CCHC-type containing 7 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene 60S ribosomal protein L7-like 1 Neighboring gene maternal embryonic leucine zipper kinase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in anatomical structure development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
paired box protein Pax-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Delphinapterus leucas Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228892v3 Primary Assembly

Genomic

  1. NW_022098042.1 Reference ASM228892v3 Primary Assembly

    Range
    9079954..9271568
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022600108.1 → XP_022455816.1  paired box protein Pax-5 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9QDY2
    Related
    ENSDLEP00000020895.1, ENSDLET00000023012.1
    Conserved Domains (3) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    COG5180
    Location:112 → 371
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam12403
    Location:279 → 389
    Pax2_C; Paired-box protein 2 C terminal

  2. XM_022600110.1 → XP_022455818.1  paired box protein Pax-5 isoform X4

    UniProtKB/TrEMBL
    A0A2Y9QKB6
    Conserved Domains (2) summary
    smart00351
    Location:16 → 140
    PAX; Paired Box domain
    pfam12403
    Location:279 → 355
    Pax2_C; Paired-box protein 2 C terminal

  3. XM_030763766.1 → XP_030619626.1  paired box protein Pax-5 isoform X1

    UniProtKB/TrEMBL
    A0A7F8KA00
    Conserved Domains (2) summary
    smart00351
    Location:15 → 139
    PAX; Paired Box domain
    pfam12403
    Location:297 → 407
    Pax2_C; Paired-box protein 2 C terminal

  4. XM_022600109.1 → XP_022455817.1  paired box protein Pax-5 isoform X3

    UniProtKB/TrEMBL
    A0A2Y9QKV1
    Conserved Domains (3) summary
    smart00351
    Location:15 → 139
    PAX; Paired Box domain
    COG5180
    Location:111 → 370
    PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
    pfam12403
    Location:278 → 388
    Pax2_C; Paired-box protein 2 C terminal
Nucleotide Protein
Heading Accession and Version

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