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SNRNP40 small nuclear ribonucleoprotein U5 subunit 40 [ Delphinapterus leucas (beluga whale) ]

Gene ID: 111175488, updated on 15-Mar-2024

Summary

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Gene symbol
SNRNP40
Gene description
small nuclear ribonucleoprotein U5 subunit 40
See related
Ensembl:ENSDLEG00000021828
Gene type
protein coding
RefSeq status
MODEL
Organism
Delphinapterus leucas
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Delphinapterus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current ASM228892v3 (GCF_002288925.2) Unplaced Scaffold NW_022098066.1 (912534..949924, complement)
100 previous assembly ASM228892v2 (GCF_002288925.1) Unplaced Scaffold NW_019160870.1 (912751..950141, complement)

NW_022098066.1Genomic Context describing neighboring genes Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene sodium/potassium transporting ATPase interacting 1 Neighboring gene zinc finger CCHC-type containing 17 Neighboring gene fatty acid binding protein 3 Neighboring gene methylosome protein 50 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U5 small nuclear ribonucleoprotein 40 kDa protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Delphinapterus leucas Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM228892v3 Primary Assembly

Genomic

  1. NW_022098066.1 Reference ASM228892v3 Primary Assembly

    Range
    912534..949924 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022575043.1 → XP_022430751.1  U5 small nuclear ribonucleoprotein 40 kDa protein

    UniProtKB/TrEMBL
    A0A2Y9NCU8
    Related
    ENSDLEP00000030681.1, ENSDLET00000033697.1
    Conserved Domains (2) summary
    cd00200
    Location:63 → 352
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:71 → 108
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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