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NHLRC1 NHL repeat containing E3 ubiquitin protein ligase 1 [ Neomonachus schauinslandi (Hawaiian monk seal) ]

Gene ID: 110586764, updated on 15-Mar-2024

Summary

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Gene symbol
NHLRC1
Gene description
NHL repeat containing E3 ubiquitin protein ligase 1
See related
EnsemblRapid:ENSNSCG00000010724
Gene type
protein coding
RefSeq status
MODEL
Organism
Neomonachus schauinslandi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Neomonachus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
1
Annotation release Status Assembly Chr Location
101 current ASM220157v2 (GCF_002201575.2) 8 NC_058410.1 (136407531..136408883, complement)
100 previous assembly ASM220157v1 (GCF_002201575.1) Unplaced Scaffold NW_018734368.1 (19945255..19946607, complement)

Chromosome 8 - NC_058410.1Genomic Context describing neighboring genes Neighboring gene nucleoporin 153 Neighboring gene 60S ribosomal protein L31-like Neighboring gene kinesin family member 13A Neighboring gene fatty acid-binding protein 5-like Neighboring gene thiopurine S-methyltransferase Neighboring gene U6 spliceosomal RNA Neighboring gene lysine demethylase 1B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation repressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase NHLRC1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neomonachus schauinslandi Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM220157v2

Genomic

  1. NC_058410.1 Reference ASM220157v2

    Range
    136407531..136408883 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021697058.1 → XP_021552733.1  E3 ubiquitin-protein ligase NHLRC1

    UniProtKB/TrEMBL
    A0A2Y9HLW1
    Related
    ENSNSCP00000013158.1, ENSNSCT00000014896.1
    Conserved Domains (3) summary
    cd14961
    Location:115 → 387
    NHL_TRIM32_like; NHL repeat domain of the tripartite motif-containing protein 32 (TRIM32) and related proteins
    sd00039
    Location:174 → 207
    7WD40; WD40 repeat [structural motif]
    cd16516
    Location:25 → 72
    RING-HC_malin; RING finger, HC subclass, found in malin and similar proteins
Nucleotide Protein
Heading Accession and Version

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