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PDZRN3 PDZ domain containing ring finger 3 [ Neomonachus schauinslandi (Hawaiian monk seal) ]

Gene ID: 110584755, updated on 15-Mar-2024

Summary

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Gene symbol
PDZRN3
Gene description
PDZ domain containing ring finger 3
See related
EnsemblRapid:ENSNSCG00000021100
Gene type
protein coding
RefSeq status
MODEL
Organism
Neomonachus schauinslandi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Pinnipedia; Phocidae; Neomonachus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ASM220157v2 (GCF_002201575.2) 1 NC_058403.1 (174631853..174872037)
100 previous assembly ASM220157v1 (GCF_002201575.1) Unplaced Scaffold NW_018734355.1 (20425113..20665356, complement)

Chromosome 1 - NC_058403.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene contactin 3 Neighboring gene protein phosphatase 4 regulatory subunit 2 Neighboring gene glucoside xylosyltransferase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuromuscular junction development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuromuscular junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase PDZRN3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Neomonachus schauinslandi Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM220157v2

Genomic

  1. NC_058403.1 Reference ASM220157v2

    Range
    174631853..174872037
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021694898.1 → XP_021550573.1  E3 ubiquitin-protein ligase PDZRN3 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9HFM3
    Related
    ENSNSCP00000026656.1, ENSNSCT00000030035.1
    Conserved Domains (4) summary
    smart00228
    Location:246 → 338
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:420 → 488
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl17238
    Location:17 → 58
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    cl19105
    Location:69 → 132
    Sina; Seven in absentia (Sina) protein family, C-terminal substrate binding domain; composed of the Drosophila Sina protein, the mammalian Sina homolog (Siah), the plant protein SINAT5, and similar proteins. Sina, Siah and SINAT5 are RING-containing proteins ...

  2. XM_021694900.1 → XP_021550575.1  E3 ubiquitin-protein ligase PDZRN3 isoform X3

    UniProtKB/TrEMBL
    A0A2Y9HM38
    Conserved Domains (2) summary
    smart00228
    Location:7 → 38
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:120 → 188
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  3. XM_021694899.1 → XP_021550574.1  E3 ubiquitin-protein ligase PDZRN3 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9HLZ9
    Related
    ENSNSCP00000026665.1, ENSNSCT00000030045.1
    Conserved Domains (2) summary
    cd00992
    Location:137 → 205
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cl00117
    Location:20 → 53
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
Nucleotide Protein
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