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Coch cochlin [ Meriones unguiculatus (Mongolian gerbil) ]

Gene ID: 110558978, updated on 15-Mar-2024

Summary

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Gene symbol
Coch
Gene description
cochlin
See related
EnsemblRapid:ENSMUGG00015011369
Gene type
protein coding
RefSeq status
MODEL
Organism
Meriones unguiculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Gerbillinae; Meriones
Orthologs
human mouse all
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Genomic context

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See Coch in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_10 current Bangor_MerUng_6.1 (GCF_030254825.1) 7 NC_083355.1 (56773438..56786705)
100 previous assembly MunDraft-v1.0 (GCF_002204375.1) Unplaced Scaffold NW_018658888.1 (200820..214082)

Chromosome 7 - NC_083355.1Genomic Context describing neighboring genes Neighboring gene sec1 family domain containing 1 Neighboring gene U11/U12 small nuclear ribonucleoprotein 48 kDa protein-like Neighboring gene striatin 3 Neighboring gene adaptor related protein complex 4 subunit sigma 1 Neighboring gene HECT domain E3 ubiquitin protein ligase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
cochlin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030254825.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Bangor_MerUng_6.1

Genomic

  1. NC_083355.1 Reference Bangor_MerUng_6.1

    Range
    56773438..56786705
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021654181.2 → XP_021509856.1  cochlin isoform X1

    Related
    ENSMUGP00015015263.1, ENSMUGT00015020413.1
    Conserved Domains (3) summary
    smart00603
    Location:34 → 116
    LCCL; LCCL domain
    cd01472
    Location:370 → 531
    vWA_collagen; von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form ...
    cd01482
    Location:168 → 332
    vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...

  2. XM_060387460.1 → XP_060243443.1  cochlin isoform X2

    Related
    ENSMUGP00015015260.1, ENSMUGT00015020409.1
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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