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vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110529752, updated on 15-Mar-2024

Summary

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Gene symbol
vipas39
Gene description
VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog
See related
Ensembl:ENSOMYG00000015295
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 8
Exon count:
21
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 8 NC_048572.1 (28860659..28881460)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 8 NC_035084.1 (25837889..25858828)

Chromosome 8 - NC_048572.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110529751 Neighboring gene protein sel-1 homolog 1 Neighboring gene AHA1, activator of heat shock protein ATPase homolog 1a Neighboring gene probable G-protein coupled receptor 132 Neighboring gene cell division cycle associated 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuolar transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spermatogenesis-defective protein 39 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048572.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    28860659..28881460
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021612231.2 → XP_021467906.2  spermatogenesis-defective protein 39 homolog

    UniProtKB/TrEMBL
    A0A8C7Q8K0, A0A8C7QAL6
    Conserved Domains (1) summary
    pfam04840
    Location:167 → 415
    Vps16_C; Vps16, C-terminal region

  2. XM_021612233.2 → XP_021467908.2  spermatogenesis-defective protein 39 homolog

    UniProtKB/TrEMBL
    A0A8C7Q8K0, A0A8C7QAL6
    Related
    ENSOMYP00000033333.2, ENSOMYT00000036355.2
    Conserved Domains (1) summary
    pfam04840
    Location:167 → 415
    Vps16_C; Vps16, C-terminal region

  3. XM_036985236.1 → XP_036841131.1  spermatogenesis-defective protein 39 homolog

    UniProtKB/TrEMBL
    A0A8C7Q8K0, A0A8C7QAL6
    Conserved Domains (1) summary
    pfam04840
    Location:167 → 415
    Vps16_C; Vps16, C-terminal region
Nucleotide Protein
Heading Accession and Version

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