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LOC110528283 tectonic-1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110528283, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110528283
Gene description
tectonic-1
See related
Ensembl:ENSOMYG00000005584
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
tctn1
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Genomic context

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Location:
chromosome: 7
Exon count:
13
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 7 NC_048571.1 (65929180..65942126, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 7 NC_035083.1 (57036644..57049603, complement)

Chromosome 7 - NC_048571.1Genomic Context describing neighboring genes Neighboring gene trichohyalin Neighboring gene beta-crystallin B3-like Neighboring gene voltage-gated hydrogen channel 1 Neighboring gene serine/threonine-protein kinase 10-A Neighboring gene phospholipid phosphatase 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to ciliary transition zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MKS complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tectonic-1
Names
tectonic family member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048571.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    65929180..65942126 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021610222.2 → XP_021465897.2  tectonic-1 isoform X1

    Conserved Domains (1) summary
    pfam07773
    Location:113 → 435
    DUF1619; Protein of unknown function (DUF1619)

  2. XM_021610223.2 → XP_021465898.2  tectonic-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C7NQ84
    Related
    ENSOMYP00000011109.2, ENSOMYT00000012317.2
    Conserved Domains (1) summary
    pfam07773
    Location:113 → 434
    DUF1619; Protein of unknown function (DUF1619)
Nucleotide Protein
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