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LOC110522973 PATJ crumbs cell polarity complex component [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110522973, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110522973
Gene description
PATJ crumbs cell polarity complex component
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
patj
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Genomic context

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Location:
chromosome: 5
Exon count:
51
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 5 NC_048569.1 (55268446..55487967, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 5 NC_035081.1 (51827239..51995515, complement)

Chromosome 5 - NC_048569.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118964623 Neighboring gene T-cell acute lymphocytic leukemia protein 1 homolog Neighboring gene PDZK1-interacting protein 1 Neighboring gene TM2 domain-containing protein 1 Neighboring gene nuclear factor 1 A-type Neighboring gene FRAS1-related extracellular matrix protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inaD-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048569.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    55268446..55487967 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036977876.1 → XP_036833771.1  inaD-like protein isoform X4

    UniProtKB/TrEMBL
    A0A8C7R6N3
    Conserved Domains (3) summary
    smart00228
    Location:1519 → 1604
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1887 → 1971
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:12 → 69
    L27_2

  2. XM_036977875.1 → XP_036833770.1  inaD-like protein isoform X3

    UniProtKB/TrEMBL
    A0A8C7R6N3
    Conserved Domains (3) summary
    smart00228
    Location:1523 → 1608
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1891 → 1975
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:12 → 69
    L27_2

  3. XM_036977874.1 → XP_036833769.1  inaD-like protein isoform X2

    UniProtKB/TrEMBL
    A0A8C7R6N3
    Conserved Domains (3) summary
    smart00228
    Location:1542 → 1627
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1910 → 1994
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:12 → 69
    L27_2

  4. XM_036977877.1 → XP_036833772.1  inaD-like protein isoform X5

    UniProtKB/TrEMBL
    A0A8C7R6N3
    Conserved Domains (3) summary
    smart00228
    Location:1543 → 1628
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1882 → 1966
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:12 → 69
    L27_2

  5. XM_036977870.1 → XP_036833765.1  inaD-like protein isoform X1

    UniProtKB/TrEMBL
    A0A8C7R6N3
    Conserved Domains (3) summary
    smart00228
    Location:1543 → 1628
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1911 → 1995
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:12 → 69
    L27_2

  6. XM_036977871.1 → XP_036833766.1  inaD-like protein isoform X1

    UniProtKB/TrEMBL
    A0A8C7R6N3
    Conserved Domains (3) summary
    smart00228
    Location:1543 → 1628
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1911 → 1995
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:12 → 69
    L27_2

  7. XM_036977872.1 → XP_036833767.1  inaD-like protein isoform X1

    UniProtKB/TrEMBL
    A0A8C7R6N3
    Conserved Domains (3) summary
    smart00228
    Location:1543 → 1628
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1911 → 1995
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:12 → 69
    L27_2

  8. XM_036977873.1 → XP_036833768.1  inaD-like protein isoform X1

    UniProtKB/TrEMBL
    A0A8C7R6N3
    Conserved Domains (3) summary
    smart00228
    Location:1543 → 1628
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1911 → 1995
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:12 → 69
    L27_2
Nucleotide Protein
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