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LOC110522805 liprin-beta-1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110522805, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110522805
Gene description
liprin-beta-1
See related
Ensembl:ENSOMYG00000045939
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
ppfibp1
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Genomic context

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Location:
chromosome: 1
Exon count:
28
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 1 NC_048565.1 (41013294..41088082)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 1 NC_035077.1 (37726172..37800734)

Chromosome 1 - NC_048565.1Genomic Context describing neighboring genes Neighboring gene vesicular glutamate transporter 3-like Neighboring gene EF-hand domain-containing protein Neighboring gene guanine nucleotide-binding protein G(s) subunit alpha Neighboring gene uncharacterized LOC118964589 Neighboring gene synembryn-B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in neuromuscular junction development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in presynaptic active zone IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
liprin-beta-1
Names
PPFIA binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048565.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    41013294..41088082
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021601252.2 → XP_021456927.2  liprin-beta-1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7UNY1, A0A8C7UZT4
    Related
    ENSOMYP00000102880.2, ENSOMYT00000111576.2
    Conserved Domains (4) summary
    cd09563
    Location:646 → 709
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:720 → 782
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:805 → 876
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:103 → 372
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  2. XM_021601255.2 → XP_021456930.2  liprin-beta-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C7UY27, A0A8C7UZT4
    Related
    ENSOMYP00000102899.2, ENSOMYT00000111596.2
    Conserved Domains (4) summary
    cd09563
    Location:631 → 694
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:705 → 767
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:790 → 861
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:103 → 357
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

  3. XM_021601257.2 → XP_021456932.2  liprin-beta-1 isoform X3

    UniProtKB/TrEMBL
    A0A8C7UZT4, A0A8C7V552
    Related
    ENSOMYP00000102912.2, ENSOMYT00000111611.2
    Conserved Domains (4) summary
    cd09563
    Location:615 → 678
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:689 → 751
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:774 → 845
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    TIGR02168
    Location:105 → 342
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  4. XM_021601258.2 → XP_021456933.2  liprin-beta-1 isoform X4

    UniProtKB/TrEMBL
    A0A8C7UZT4
    Related
    ENSOMYP00000102927.2, ENSOMYT00000111626.2
    Conserved Domains (4) summary
    cd09563
    Location:600 → 663
    SAM_liprin-beta1,2_repeat1; SAM domain of liprin-beta1,2 proteins repeat 1
    cd09566
    Location:674 → 736
    SAM_liprin-beta1,2_repeat2; SAM domain of liprin-beta1,2 proteins repeat 2
    cd09569
    Location:759 → 830
    SAM_liprin-beta1,2_repeat3; SAM domain of liprin-beta proteins repeat 3
    COG1196
    Location:103 → 326
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
Nucleotide Protein
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