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gdpd1 glycerophosphodiester phosphodiesterase domain containing 1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110507351, updated on 15-Mar-2024

Summary

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Gene symbol
gdpd1
Gene description
glycerophosphodiester phosphodiesterase domain containing 1
See related
Ensembl:ENSOMYG00000044142
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See gdpd1 in Genome Data Viewer
Location:
chromosome: 27
Exon count:
17
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 27 NC_048591.1 (3358469..3384597, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 27 NC_035103.1 (3206338..3232860, complement)

Chromosome 27 - NC_048591.1Genomic Context describing neighboring genes Neighboring gene matrix metalloproteinase-23 Neighboring gene AP-2 complex subunit mu-B Neighboring gene NADPH--cytochrome P450 reductase Neighboring gene uncharacterized LOC110507352 Neighboring gene RNA-binding protein FUS

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysophospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acylethanolamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysophospholipase D GDPD1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048591.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    3358469..3384597 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036965684.1 → XP_036821579.1  lysophospholipase D GDPD1 isoform X1

    UniProtKB/TrEMBL
    A0A060WPH6
    Conserved Domains (1) summary
    cd08612
    Location:43 → 323
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  2. XM_036965690.1 → XP_036821585.1  lysophospholipase D GDPD1 isoform X4

    UniProtKB/TrEMBL
    A0A060WPH6
    Conserved Domains (1) summary
    cd08612
    Location:1 → 258
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  3. XM_021587289.2 → XP_021442964.2  lysophospholipase D GDPD1 isoform X3

    UniProtKB/TrEMBL
    A0A060WPH6, A0A8C7UB21
    Conserved Domains (1) summary
    cd08612
    Location:13 → 312
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  4. XM_021587287.2 → XP_021442962.2  lysophospholipase D GDPD1 isoform X3

    UniProtKB/TrEMBL
    A0A060WPH6, A0A8C7UB21
    Conserved Domains (1) summary
    cd08612
    Location:13 → 312
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  5. XM_036965686.1 → XP_036821581.1  lysophospholipase D GDPD1 isoform X3

    UniProtKB/TrEMBL
    A0A060WPH6, A0A8C7UB21
    Conserved Domains (1) summary
    cd08612
    Location:13 → 312
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  6. XM_021587288.2 → XP_021442963.2  lysophospholipase D GDPD1 isoform X3

    UniProtKB/TrEMBL
    A0A060WPH6, A0A8C7UB21
    Conserved Domains (1) summary
    cd08612
    Location:13 → 312
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  7. XM_036965687.1 → XP_036821582.1  lysophospholipase D GDPD1 isoform X3

    UniProtKB/TrEMBL
    A0A060WPH6, A0A8C7UB21
    Conserved Domains (1) summary
    cd08612
    Location:13 → 312
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  8. XM_036965685.1 → XP_036821580.1  lysophospholipase D GDPD1 isoform X2

    UniProtKB/TrEMBL
    A0A060WPH6
    Conserved Domains (1) summary
    cd08612
    Location:37 → 317
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  9. XM_036965689.1 → XP_036821584.1  lysophospholipase D GDPD1 isoform X3

    UniProtKB/TrEMBL
    A0A060WPH6, A0A8C7UB21
    Related
    ENSOMYP00000096984.2, ENSOMYT00000105368.2
    Conserved Domains (1) summary
    cd08612
    Location:13 → 312
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  10. XM_036965691.1 → XP_036821586.1  lysophospholipase D GDPD1 isoform X5

    Conserved Domains (1) summary
    cd08612
    Location:43 → 246
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins
Nucleotide Protein
Heading Accession and Version

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