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tsr1 TSR1 ribosome maturation factor [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110503948, updated on 15-Mar-2024

Summary

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Gene symbol
tsr1
Gene description
TSR1 ribosome maturation factor
See related
Ensembl:ENSOMYG00000019311
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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See tsr1 in Genome Data Viewer
Location:
chromosome: 24
Exon count:
15
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 24 NC_048588.1 (19525896..19542981, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 24 NC_035100.1 (18617155..18634515, complement)

Chromosome 24 - NC_048588.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118944022 Neighboring gene hypermethylated in cancer 1 protein Neighboring gene TAO kinase 1a Neighboring gene RNA polymerase II-associated factor 1 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables U3 snoRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of preribosome, small subunit precursor IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-rRNA-processing protein TSR1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048588.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    19525896..19542981 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021582613.2 → XP_021438288.2  pre-rRNA-processing protein TSR1 homolog

    UniProtKB/TrEMBL
    A0A060Y5E9, A0A8C7QU74
    Related
    ENSOMYP00000041874.2, ENSOMYT00000045688.2
    Conserved Domains (2) summary
    COG5177
    Location:40 → 820
    COG5177; Uncharacterized conserved protein [Function unknown]
    pfam04950
    Location:534 → 820
    RIBIOP_C; 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal
Nucleotide Protein
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