U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

utp20 UTP20 small subunit processome component [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110500184, updated on 15-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
utp20
Gene description
UTP20 small subunit processome component
See related
Ensembl:ENSOMYG00000044291
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See utp20 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
58
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 21 NC_048585.1 (28351951..28376045)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 21 NC_035097.1 (19963176..19989516)

Chromosome 21 - NC_048585.1Genomic Context describing neighboring genes Neighboring gene electron transfer flavoprotein regulatory factor 1 Neighboring gene sodium-coupled monocarboxylate transporter 1-like Neighboring gene ADP-ribosylation factor-like protein 1 Neighboring gene DENN domain-containing protein 11 Neighboring gene FYVE, RhoGEF and PH domain-containing protein 4

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
small subunit processome component 20 homolog

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048585.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    28351951..28376045
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036957546.1 → XP_036813441.1  small subunit processome component 20 homolog

    UniProtKB/TrEMBL
    A0A8C7UQ68, A0A8C7UU28
    Related
    ENSOMYP00000097433.2, ENSOMYT00000105830.2
    Conserved Domains (1) summary
    pfam07539
    Location:914 → 1539
    DRIM; Down-regulated in metastasis
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.