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sav1 salvador family WW domain containing protein 1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110498279, updated on 15-Mar-2024

Summary

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Gene symbol
sav1
Gene description
salvador family WW domain containing protein 1
See related
Ensembl:ENSOMYG00000015163
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 19
Exon count:
8
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 19 NC_048583.1 (62020594..62038893)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 19 NC_035095.1 (57258711..57318164, complement)

Chromosome 19 - NC_048583.1Genomic Context describing neighboring genes Neighboring gene lysophosphatidylserine lipase ABHD12 Neighboring gene ninein (GSK3B interacting protein) Neighboring gene atlastin GTPase 1 Neighboring gene mitogen-activated protein kinase kinase kinase kinase 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-Wide Discovery of Long Non-Coding RNAs in Rainbow Trout. Al-Tobasei R, et al. PLoS One, 2016. PMID 26895175, Free PMC Article
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables molecular adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in hippo signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein salvador homolog 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048583.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    62020594..62038893
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036955311.1 → XP_036811206.1  protein salvador homolog 1 isoform X2

    Conserved Domains (2) summary
    cd00201
    Location:253 → 282
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
    pfam00397
    Location:217 → 246
    WW; WW domain

  2. XM_036955312.1 → XP_036811207.1  protein salvador homolog 1 isoform X2

    Conserved Domains (2) summary
    cd00201
    Location:253 → 282
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
    pfam00397
    Location:217 → 246
    WW; WW domain

  3. XM_036955310.1 → XP_036811205.1  protein salvador homolog 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7Q3A5
    Related
    ENSOMYP00000032389.2, ENSOMYT00000035307.2
    Conserved Domains (2) summary
    cd00201
    Location:265 → 294
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
    pfam00397
    Location:229 → 258
    WW; WW domain
Nucleotide Protein
Heading Accession and Version

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