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wdhd1 WD repeat and HMG-box DNA binding protein 1 [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110497536, updated on 15-Mar-2024

Summary

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Gene symbol
wdhd1
Gene description
WD repeat and HMG-box DNA binding protein 1
See related
Ensembl:ENSOMYG00000011988
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 19
Exon count:
26
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 19 NC_048583.1 (23986466..24029752)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 19 NC_035095.1 (20829948..20872712)

Chromosome 19 - NC_048583.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110497479 Neighboring gene suppressor of cytokine signaling 4-like Neighboring gene GTP cyclohydrolase 1-like Neighboring gene protein Smaug homolog 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA-templated DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear replication fork IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat and HMG-box DNA-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048583.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    23986466..24029752
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036954471.1 → XP_036810366.1  WD repeat and HMG-box DNA-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7PP49, A0A8C7PP68
    Related
    ENSOMYP00000025316.1, ENSOMYT00000027725.2
    Conserved Domains (4) summary
    smart00398
    Location:1023 → 1076
    HMG; high mobility group
    cd00200
    Location:10 → 289
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:17 → 54
    7WD40; WD40 repeat [structural motif]
    pfam12341
    Location:426 → 709
    Mcl1_mid; Minichromosome loss protein, Mcl1, middle region

  2. XM_036954473.1 → XP_036810368.1  WD repeat and HMG-box DNA-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C7PP68
    Related
    ENSOMYP00000025340.1, ENSOMYT00000027749.2
    Conserved Domains (4) summary
    smart00398
    Location:1022 → 1075
    HMG; high mobility group
    cd00200
    Location:10 → 289
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:17 → 54
    7WD40; WD40 repeat [structural motif]
    pfam12341
    Location:425 → 708
    Mcl1_mid; Minichromosome loss protein, Mcl1, middle region

  3. XM_036954472.1 → XP_036810367.1  WD repeat and HMG-box DNA-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C7PP49, A0A8C7PP68
    Conserved Domains (4) summary
    smart00398
    Location:1023 → 1076
    HMG; high mobility group
    cd00200
    Location:10 → 289
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:17 → 54
    7WD40; WD40 repeat [structural motif]
    pfam12341
    Location:426 → 709
    Mcl1_mid; Minichromosome loss protein, Mcl1, middle region
Nucleotide Protein
Heading Accession and Version

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