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LOC110491321 39S ribosomal protein L38, mitochondrial [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110491321, updated on 14-Dec-2023

Summary

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Gene symbol
LOC110491321
Gene description
39S ribosomal protein L38, mitochondrial
See related
Ensembl:ENSOMYG00000022126
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
mrpl38
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Genomic context

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Location:
chromosome: 16
Exon count:
9
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 16 NC_048580.1 (9138530..9143672)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 16 NC_035092.1 (6800301..6805443)

Chromosome 16 - NC_048580.1Genomic Context describing neighboring genes Neighboring gene RING finger protein unkempt homolog Neighboring gene protein unc-13 homolog D Neighboring gene WW domain-binding protein 2 Neighboring gene uncharacterized LOC110491322 Neighboring gene uncharacterized LOC110491323 Neighboring gene matrix metallopeptidase 25b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of mitochondrial large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
39S ribosomal protein L38, mitochondrial
Names
mitochondrial ribosomal protein L38

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048580.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    9138530..9143672
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021564685.2 → XP_021420360.1  39S ribosomal protein L38, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A8C7VT39
    Conserved Domains (1) summary
    cd00866
    Location:193 → 337
    PEBP_euk; PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes

  2. XM_021564686.2 → XP_021420361.1  39S ribosomal protein L38, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A8C7R842, A0A8C7VT39
    Related
    ENSOMYP00000048651.1, ENSOMYT00000052911.2
    Conserved Domains (1) summary
    cd00866
    Location:185 → 329
    PEBP_euk; PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes

  3. XM_021564687.2 → XP_021420362.1  39S ribosomal protein L38, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A060XJ08, A0A8C7VT39
    Related
    ENSOMYP00000048630.1, ENSOMYT00000052888.2
    Conserved Domains (1) summary
    cd00866
    Location:183 → 327
    PEBP_euk; PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes
Nucleotide Protein
Heading Accession and Version

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