U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated [ Lonchura striata (white-rumped munia) ]

Gene ID: 110480900, updated on 14-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
LSM6
Gene description
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated
Locus tag
RLOC_00001983
See related
Ensembl:ENSLSDG00000007408
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
101 current lonStrDom2 (GCF_005870125.1) 4 NC_042569.1 (14327123..14332896, complement)
100 previous assembly LonStrDom1 (GCF_002197715.1) Unplaced Scaffold NW_018657297.1 (4012919..4018689)

Chromosome 4 - NC_042569.1Genomic Context describing neighboring genes Neighboring gene sodium/bile acid cotransporter 7 Neighboring gene acrosin Neighboring gene reeler domain containing 1 Neighboring gene uncharacterized LOC110480903 Neighboring gene zinc finger protein 827

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of SSU-rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U6 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of sno(s)RNA-containing ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
U6 snRNA-associated Sm-like protein LSm6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Lonchura striata domestica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042569.1 Reference lonStrDom2 Primary Assembly

    Range
    14327123..14332896 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021549224.2 → XP_021404899.1  U6 snRNA-associated Sm-like protein LSm6

    UniProtKB/TrEMBL
    A0A218V352
    Conserved Domains (1) summary
    cd01726
    Location:7 → 74
    LSm6; Like-Sm protein 6

  2. XM_021549223.1 → XP_021404898.1  U6 snRNA-associated Sm-like protein LSm6

    UniProtKB/TrEMBL
    A0A218V352
    Related
    ENSLSDP00000010046.1, ENSLSDT00000011572.1
    Conserved Domains (1) summary
    cd01726
    Location:7 → 74
    LSm6; Like-Sm protein 6

  3. XM_021549225.2 → XP_021404900.1  U6 snRNA-associated Sm-like protein LSm6

    UniProtKB/TrEMBL
    A0A218V352
    Conserved Domains (1) summary
    cd01726
    Location:7 → 74
    LSm6; Like-Sm protein 6
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.