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CRNKL1 crooked neck pre-mRNA splicing factor 1 [ Lonchura striata (white-rumped munia) ]

Gene ID: 110477517, updated on 14-Aug-2024

Summary

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Gene symbol
CRNKL1
Gene description
crooked neck pre-mRNA splicing factor 1
Locus tag
RLOC_00000559
See related
Ensembl:ENSLSDG00000017966
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
101 current lonStrDom2 (GCF_005870125.1) 3 NC_042568.1 (28949712..28959788)
100 previous assembly LonStrDom1 (GCF_002197715.1) Unplaced Scaffold NW_018657089.1 (241494..251586)

Chromosome 3 - NC_042568.1Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 61 Neighboring gene INSM transcriptional repressor 1 Neighboring gene uncharacterized LOC116183382 Neighboring gene uncharacterized LOC110477522 Neighboring gene solute carrier family 24 member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
crooked neck-like protein 1
Names
Crooked neck-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lonchura striata domestica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042568.1 Reference lonStrDom2 Primary Assembly

    Range
    28949712..28959788
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021543336.2 → XP_021399011.1  crooked neck-like protein 1

    UniProtKB/TrEMBL
    A0A218UE33
    Related
    ENSLSDP00000025704.1
    Conserved Domains (5) summary
    pfam02184
    Location:195 → 226
    HAT; HAT (Half-A-TPR) repeat
    sd00006
    Location:83 → 108
    TPR; TPR repeat [structural motif]
    cl26712
    Location:55 → 194
    U3_assoc_6; U3 small nucleolar RNA-associated protein 6
    cl26993
    Location:317 → 585
    Suf; Suppressor of forked protein (Suf)
    cl27366
    Location:571 → 639
    TktA; Transketolase [Carbohydrate transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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