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UTP4 UTP4 small subunit processome component [ Lonchura striata (white-rumped munia) ]

Gene ID: 110468819, updated on 14-Aug-2024

Summary

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Gene symbol
UTP4
Gene description
UTP4 small subunit processome component
Locus tag
RLOC_00007459
See related
Ensembl:ENSLSDG00000004645
Gene type
protein coding
RefSeq status
MODEL
Organism
Lonchura striata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Lonchura
Also known as
CIRH1A; Cirhin
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
16
Annotation release Status Assembly Chr Location
101 current lonStrDom2 (GCF_005870125.1) 11 NC_042577.1 (962773..967577, complement)
100 previous assembly LonStrDom1 (GCF_002197715.1) Unplaced Scaffold NW_018655271.1 (962773..967577, complement)

Chromosome 11 - NC_042577.1Genomic Context describing neighboring genes Neighboring gene peptide deformylase, mitochondrial Neighboring gene vacuolar protein sorting 4 homolog A Neighboring gene syntrophin beta 2 Neighboring gene chromosome transmission fidelity factor 8 Neighboring gene hyaluronan synthase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 90S preribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of t-UTP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U3 small nucleolar RNA-associated protein 4 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lonchura striata domestica Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference lonStrDom2 Primary Assembly

Genomic

  1. NC_042577.1 Reference lonStrDom2 Primary Assembly

    Range
    962773..967577 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021526982.1 → XP_021382657.1  U3 small nucleolar RNA-associated protein 4 homolog

    UniProtKB/TrEMBL
    A0A218USE0
    Related
    ENSLSDP00000006308.1, ENSLSDT00000007451.1
    Conserved Domains (2) summary
    sd00039
    Location:104 → 143
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:16 → 305
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
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