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PATJ PATJ crumbs cell polarity complex component [ Numida meleagris (helmeted guineafowl) ]

Gene ID: 110402879, updated on 15-Mar-2024

Summary

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Gene symbol
PATJ
Gene description
PATJ crumbs cell polarity complex component
Gene type
protein coding
RefSeq status
MODEL
Organism
Numida meleagris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Numididae; Numida
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
49
Annotation release Status Assembly Chr Location
100 current NumMel1.0 (GCF_002078875.1) 7 NC_034415.1 (27501155..27648296)

Chromosome 7 - NC_034415.1Genomic Context describing neighboring genes Neighboring gene nuclear factor I A Neighboring gene uncharacterized LOC110402883 Neighboring gene TM2 domain containing 1 Neighboring gene KN motif and ankyrin repeat domains 4 Neighboring gene ubiquitin specific peptidase 1 Neighboring gene dedicator of cytokinesis 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034415.1 Chromosome 7 Reference NumMel1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inaD-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Numida meleagris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NumMel1.0 Primary Assembly

Genomic

  1. NC_034415.1 Reference NumMel1.0 Primary Assembly

    Range
    27501155..27648296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021405454.1 → XP_021261129.1  inaD-like protein isoform X1

    Conserved Domains (3) summary
    smart00228
    Location:1440 → 1525
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1804 → 1888
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:8 → 65
    L27_2

  2. XM_021405461.1 → XP_021261136.1  inaD-like protein isoform X5

    Conserved Domains (3) summary
    smart00228
    Location:1440 → 1525
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1682 → 1767
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:8 → 65
    L27_2

  3. XM_021405453.1 → XP_021261128.1  inaD-like protein isoform X1

    Conserved Domains (3) summary
    smart00228
    Location:1440 → 1525
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1804 → 1888
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:8 → 65
    L27_2

  4. XM_021405462.1 → XP_021261137.1  inaD-like protein isoform X6

    Conserved Domains (3) summary
    smart00228
    Location:1440 → 1525
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1042 → 1133
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:8 → 65
    L27_2

  5. XM_021405459.1 → XP_021261134.1  inaD-like protein isoform X3

    Conserved Domains (3) summary
    smart00228
    Location:1440 → 1525
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1803 → 1887
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:8 → 65
    L27_2

  6. XM_021405463.1 → XP_021261138.1  inaD-like protein isoform X7

    Conserved Domains (3) summary
    smart00228
    Location:1330 → 1415
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1694 → 1778
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:8 → 65
    L27_2

  7. XM_021405460.1 → XP_021261135.1  inaD-like protein isoform X4

    Conserved Domains (3) summary
    smart00228
    Location:1395 → 1480
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1759 → 1843
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:8 → 65
    L27_2

  8. XM_021405458.1 → XP_021261133.1  inaD-like protein isoform X2

    Conserved Domains (3) summary
    smart00228
    Location:1439 → 1524
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1803 → 1887
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:8 → 65
    L27_2

  9. XM_021405455.1 → XP_021261130.1  inaD-like protein isoform X1

    Conserved Domains (3) summary
    smart00228
    Location:1440 → 1525
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1804 → 1888
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:8 → 65
    L27_2

  10. XM_021405456.1 → XP_021261131.1  inaD-like protein isoform X1

    Conserved Domains (3) summary
    smart00228
    Location:1440 → 1525
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1804 → 1888
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:8 → 65
    L27_2

  11. XM_021405457.1 → XP_021261132.1  inaD-like protein isoform X1

    Conserved Domains (3) summary
    smart00228
    Location:1440 → 1525
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:1804 → 1888
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam09045
    Location:8 → 65
    L27_2
Nucleotide Protein
Heading Accession and Version

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