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ATG4B autophagy related 4B cysteine peptidase [ Numida meleagris (helmeted guineafowl) ]

Gene ID: 110398204, updated on 15-Mar-2024

Summary

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Gene symbol
ATG4B
Gene description
autophagy related 4B cysteine peptidase
See related
Ensembl:ENSNMEG00000014798
Gene type
protein coding
RefSeq status
MODEL
Organism
Numida meleagris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Numididae; Numida
Orthologs
human mouse all
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Genomic context

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See ATG4B in Genome Data Viewer
Location:
chromosome: 4
Exon count:
15
Annotation release Status Assembly Chr Location
100 current NumMel1.0 (GCF_002078875.1) 4 NC_034412.1 (20619440..20642495, complement)

Chromosome 4 - NC_034412.1Genomic Context describing neighboring genes Neighboring gene D-2-hydroxyglutarate dehydrogenase Neighboring gene inhibitor of growth family member 5 Neighboring gene deoxythymidylate kinase Neighboring gene THAP domain containing 4 Neighboring gene espin like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034412.1 Chromosome 4 Reference NumMel1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-phosphatidylethanolamide deconjugating activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cysteine protease ATG4B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Numida meleagris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NumMel1.0 Primary Assembly

Genomic

  1. NC_034412.1 Reference NumMel1.0 Primary Assembly

    Range
    20619440..20642495 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021395659.1 → XP_021251334.1  cysteine protease ATG4B

    Conserved Domains (1) summary
    pfam03416
    Location:39 → 335
    Peptidase_C54; Peptidase family C54

  2. XM_021395658.1 → XP_021251333.1  cysteine protease ATG4B

    Related
    ENSNMEP00000016860.1, ENSNMET00000025089.1
    Conserved Domains (1) summary
    pfam03416
    Location:39 → 335
    Peptidase_C54; Peptidase family C54

  3. XM_021395657.1 → XP_021251332.1  cysteine protease ATG4B

    Conserved Domains (1) summary
    pfam03416
    Location:39 → 335
    Peptidase_C54; Peptidase family C54

  4. XM_021395656.1 → XP_021251331.1  cysteine protease ATG4B

    Conserved Domains (1) summary
    pfam03416
    Location:39 → 335
    Peptidase_C54; Peptidase family C54
Nucleotide Protein
Heading Accession and Version

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