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Arid4a AT-rich interaction domain 4A [ Mus pahari (shrew mouse) ]

Gene ID: 110324222, updated on 15-Mar-2024

Summary

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Gene symbol
Arid4a
Gene description
AT-rich interaction domain 4A
See related
Ensembl:MGP_PahariEiJ_G0029580
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus pahari
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Coelomys
Orthologs
human mouse all
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Genomic context

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See Arid4a in Genome Data Viewer
Location:
chromosome: 7
Exon count:
24
Annotation release Status Assembly Chr Location
101 current PAHARI_EIJ_v1.1 (GCF_900095145.1) 7 NC_034596.1 (66508302..66575883)

Chromosome 7 - NC_034596.1Genomic Context describing neighboring genes Neighboring gene proteasome 20S subunit alpha 3 Neighboring gene uncharacterized LOC110324320 Neighboring gene uncharacterized LOC115064395 Neighboring gene translocase of outer mitochondrial membrane 20 like Neighboring gene translocase of inner mitochondrial membrane 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034596.1 Chromosome 7 Reference PAHARI_EIJ_v1.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
AT-rich interactive domain-containing protein 4A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus pahari Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference PAHARI_EIJ_v1.1

Genomic

  1. NC_034596.1 Reference PAHARI_EIJ_v1.1

    Range
    66508302..66575883
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021201598.2 → XP_021057257.1  AT-rich interactive domain-containing protein 4A

    Related
    MGP_PahariEiJ_P0082580, MGP_PahariEiJ_T0082580.1
    Conserved Domains (5) summary
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    COG5271
    Location:650 → 997
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd16882
    Location:312 → 397
    ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
    cd18641
    Location:578 → 636
    CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins
    pfam08169
    Location:170 → 262
    RBB1NT; RBB1NT (NUC162) domain

  2. XM_029541108.1 → XP_029396968.1  AT-rich interactive domain-containing protein 4A

    Conserved Domains (5) summary
    smart00333
    Location:58 → 113
    TUDOR; Tudor domain
    COG5271
    Location:650 → 997
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    cd16882
    Location:312 → 397
    ARID_ARID4A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 4A (ARID4A) and similar proteins
    cd18641
    Location:578 → 636
    CBD_RBP1_like; chromo barrel domain of retinoblastoma binding protein 1, and similar proteins
    pfam08169
    Location:170 → 262
    RBB1NT; RBB1NT (NUC162) domain
Nucleotide Protein
Heading Accession and Version

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