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Tom1l2 target of myb1 like 2 membrane trafficking protein [ Mus caroli (Ryukyu mouse) ]

Gene ID: 110306232, updated on 15-Mar-2024

Summary

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Gene symbol
Tom1l2
Gene description
target of myb1 like 2 membrane trafficking protein
See related
Ensembl:MGP_CAROLIEiJ_G0016452
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus caroli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
17
Annotation release Status Assembly Chr Location
101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 11 NC_034580.1 (55055253..55177085, complement)

Chromosome 11 - NC_034580.1Genomic Context describing neighboring genes Neighboring gene dynein light chain 1, cytoplasmic Neighboring gene retinoic acid induced 1 Neighboring gene sterol regulatory element binding transcription factor 1 Neighboring gene dynein regulatory complex subunit 3 Neighboring gene ATP synthase mitochondrial F1 complex assembly factor 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034580.1 Chromosome 11 Reference CAROLI_EIJ_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TOM1-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAROLI_EIJ_v1.1 Primary Assembly

Genomic

  1. NC_034580.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Range
    55055253..55177085 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029483880.1 → XP_029339740.1  TOM1-like protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A6P7RWY9
    Related
    MGP_CAROLIEiJ_P0027004, MGP_CAROLIEiJ_T0027004.1

  2. XM_021178426.1 → XP_021034085.1  TOM1-like protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A6P5QKI3
    Related
    MGP_CAROLIEiJ_P0027003, MGP_CAROLIEiJ_T0027003.1
    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14238
    Location:218 → 309
    GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

  3. XM_021178425.2 → XP_021034084.1  TOM1-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A6P5QSB7
    Conserved Domains (2) summary
    cd03565
    Location:12 → 152
    VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
    cd14238
    Location:218 → 309
    GAT_TM1L2; GAT domain found in target of Myb-like protein 2 (Tom1L2)

  4. XM_029483881.1 → XP_029339741.1  TOM1-like protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A6P7RW50
    Related
    MGP_CAROLIEiJ_P0027010, MGP_CAROLIEiJ_T0027010.1
Nucleotide Protein
Heading Accession and Version

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