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Vps36 vacuolar protein sorting 36 homolog [ Mus caroli (Ryukyu mouse) ]

Gene ID: 110300149, updated on 15-Mar-2024

Summary

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Gene symbol
Vps36
Gene description
vacuolar protein sorting 36 homolog
See related
Ensembl:MGP_CAROLIEiJ_G0030895
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus caroli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 8 NC_034577.1 (16716304..16742476)

Chromosome 8 - NC_034577.1Genomic Context describing neighboring genes Neighboring gene NIMA related kinase 5 Neighboring gene cytoskeleton associated protein 2 Neighboring gene 60S ribosomal protein L30 pseudogene Neighboring gene thrombospondin type 1 domain containing 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034577.1 Chromosome 8 Reference CAROLI_EIJ_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol-3-phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESCRT II complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein-sorting-associated protein 36

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAROLI_EIJ_v1.1 Primary Assembly

Genomic

  1. NC_034577.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Range
    16716304..16742476
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029480682.1 → XP_029336542.1  vacuolar protein-sorting-associated protein 36

    UniProtKB/TrEMBL
    A0A6P7R7H5
    Related
    MGP_CAROLIEiJ_P0083941, MGP_CAROLIEiJ_T0083941.1
    Conserved Domains (2) summary
    pfam04157
    Location:91 → 251
    EAP30; EAP30/Vps36 family
    cl17171
    Location:1 → 107
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
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