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Upf1 UPF1 RNA helicase and ATPase [ Mus caroli (Ryukyu mouse) ]

Gene ID: 110299629, updated on 15-Mar-2024

Summary

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Gene symbol
Upf1
Gene description
UPF1 RNA helicase and ATPase
See related
Ensembl:MGP_CAROLIEiJ_G0031142
Gene type
protein coding
RefSeq status
MODEL
Organism
Mus caroli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
24
Annotation release Status Assembly Chr Location
101 current CAROLI_EIJ_v1.1 (GCF_900094665.1) 8 NC_034577.1 (62541213..62563003, complement)

Chromosome 8 - NC_034577.1Genomic Context describing neighboring genes Neighboring gene homer scaffold protein 3 Neighboring gene DEAD-box helicase 49 Neighboring gene COPI coat complex subunit epsilon Neighboring gene ceramide synthase 1 Neighboring gene growth differentiation factor 1 Neighboring gene cartilage oligomeric matrix protein Neighboring gene CREB regulated transcription coactivator 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_034577.1 Chromosome 8 Reference CAROLI_EIJ_v1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
regulator of nonsense transcripts 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mus caroli Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CAROLI_EIJ_v1.1 Primary Assembly

Genomic

  1. NC_034577.1 Reference CAROLI_EIJ_v1.1 Primary Assembly

    Range
    62541213..62563003 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021169358.2 → XP_021025017.1  regulator of nonsense transcripts 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P5QCC0
    Related
    MGP_CAROLIEiJ_P0084765, MGP_CAROLIEiJ_T0084765.1
    Conserved Domains (2) summary
    COG1112
    Location:140 → 915
    DNA2; Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]
    cd18039
    Location:476 → 709
    DEXXQc_UPF1; DEXXQ-box helicase domain of UPF1

  2. XM_021169359.2 → XP_021025018.1  regulator of nonsense transcripts 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P5Q5D6
    Related
    MGP_CAROLIEiJ_P0084766, MGP_CAROLIEiJ_T0084766.1
    Conserved Domains (2) summary
    COG1112
    Location:140 → 904
    DNA2; Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]
    cd18039
    Location:465 → 698
    DEXXQc_UPF1; DEXXQ-box helicase domain of UPF1
Nucleotide Protein
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