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HDAC7 histone deacetylase 7 [ Phascolarctos cinereus (koala) ]

Gene ID: 110201470, updated on 15-Mar-2024

Summary

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Gene symbol
HDAC7
Gene description
histone deacetylase 7
See related
Ensembl:ENSPCIG00000012641
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Orthologs
human mouse all
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Genomic context

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See HDAC7 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344261.1 (1143811..1199515, complement)

NW_018344261.1Genomic Context describing neighboring genes Neighboring gene Rap guanine nucleotide exchange factor 3 Neighboring gene uncharacterized LOC110201471 Neighboring gene solute carrier family 48 member 1 Neighboring gene vitamin D receptor Neighboring gene heat shock cognate 71 kDa protein pseudogene

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018344261 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone deacetylase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone deacetylase 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018344261.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    1143811..1199515 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020977153.1 → XP_020832812.1  histone deacetylase 7 isoform X1

    UniProtKB/TrEMBL
    A0A6P5JEW7
    Related
    ENSPCIP00000016349.2, ENSPCIT00000020228.2
    Conserved Domains (1) summary
    cl17011
    Location:549 → 955
    Arginase_HDAC; Arginase-like and histone-like hydrolases

  2. XM_020977155.1 → XP_020832814.1  histone deacetylase 7 isoform X3

    UniProtKB/TrEMBL
    A0A6P5JP48
    Related
    ENSPCIP00000016355.2, ENSPCIT00000020234.2
    Conserved Domains (1) summary
    cd10008
    Location:549 → 926
    HDAC7; Histone deacetylase 7

  3. XM_020977154.1 → XP_020832813.1  histone deacetylase 7 isoform X2

    UniProtKB/TrEMBL
    A0A6P5JHD4
    Conserved Domains (2) summary
    cl17011
    Location:545 → 951
    Arginase_HDAC; Arginase-like and histone-like hydrolases
    cl26464
    Location:214 → 544
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version

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