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NYX nyctalopin [ Phascolarctos cinereus (koala) ]

Gene ID: 110194628, updated on 15-Mar-2024

Summary

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Gene symbol
NYX
Gene description
nyctalopin
See related
Ensembl:ENSPCIG00000027323
Gene type
protein coding
RefSeq status
MODEL
Organism
Phascolarctos cinereus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344123.1 (1272737..1311418, complement)

NW_018344123.1Genomic Context describing neighboring genes Neighboring gene calcium/calmodulin dependent serine protein kinase Neighboring gene G protein-coupled receptor 82 Neighboring gene G protein-coupled receptor 34 Neighboring gene DEAD-box helicase 3 X-linked Neighboring gene uncharacterized LOC110194625 Neighboring gene ubiquitin specific peptidase 9 X-linked

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018344123 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nyctalopin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference phaCin_unsw_v4.1 Primary Assembly

Genomic

  1. NW_018344123.1 Reference phaCin_unsw_v4.1 Primary Assembly

    Range
    1272737..1311418 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020967098.1 → XP_020822757.1  nyctalopin

    UniProtKB/TrEMBL
    A0A6P5INS5
    Conserved Domains (6) summary
    TIGR00864
    Location:283 → 423
    PCC; polycystin cation channel protein
    smart00082
    Location:334 → 368
    LRRCT; Leucine rich repeat C-terminal domain
    sd00033
    Location:66 → 85
    LRR_RI; leucine-rich repeat [structural motif]
    pfam01462
    Location:30 → 59
    LRRNT; Leucine rich repeat N-terminal domain
    pfam13855
    Location:228 → 288
    LRR_8; Leucine rich repeat
    cl26793
    Location:65 → 313
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional

  2. XM_020967097.1 → XP_020822756.1  nyctalopin

    UniProtKB/TrEMBL
    A0A6P5INS5
    Related
    ENSPCIP00000037055.2, ENSPCIT00000045629.2
    Conserved Domains (6) summary
    TIGR00864
    Location:283 → 423
    PCC; polycystin cation channel protein
    smart00082
    Location:334 → 368
    LRRCT; Leucine rich repeat C-terminal domain
    sd00033
    Location:66 → 85
    LRR_RI; leucine-rich repeat [structural motif]
    pfam01462
    Location:30 → 59
    LRRNT; Leucine rich repeat N-terminal domain
    pfam13855
    Location:228 → 288
    LRR_8; Leucine rich repeat
    cl26793
    Location:65 → 313
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional

  3. XM_020967099.1 → XP_020822758.1  nyctalopin

    UniProtKB/TrEMBL
    A0A6P5INS5
    Conserved Domains (6) summary
    TIGR00864
    Location:283 → 423
    PCC; polycystin cation channel protein
    smart00082
    Location:334 → 368
    LRRCT; Leucine rich repeat C-terminal domain
    sd00033
    Location:66 → 85
    LRR_RI; leucine-rich repeat [structural motif]
    pfam01462
    Location:30 → 59
    LRRNT; Leucine rich repeat N-terminal domain
    pfam13855
    Location:228 → 288
    LRR_8; Leucine rich repeat
    cl26793
    Location:65 → 313
    PLN00113; leucine-rich repeat receptor-like protein kinase; Provisional
Nucleotide Protein
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