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edc3 enhancer of mRNA decapping 3 homolog (S. cerevisiae) [ Boleophthalmus pectinirostris (great blue-spotted mudskipper) ]

Gene ID: 110169383, updated on 15-Mar-2024

Summary

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Gene symbol
edc3
Gene description
enhancer of mRNA decapping 3 homolog (S. cerevisiae)
Locus tag
NL108_003117
Gene type
protein coding
RefSeq status
MODEL
Organism
Boleophthalmus pectinirostris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Gobiiformes; Gobioidei; Gobiidae; Oxudercinae; Boleophthalmus
Orthologs
human zebrafish all
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Genomic context

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See edc3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM2622593v1 (GCF_026225935.1) Unplaced Scaffold NW_026571152.1 (21332745..21338264)
100 previous assembly BP.fa (GCF_000788275.1) Unplaced Scaffold NW_018358326.1 (1715944..1721185)

NW_026571152.1Genomic Context describing neighboring genes Neighboring gene AT-rich interactive domain-containing protein 3B-like Neighboring gene coiled-coil domain-containing protein 186-like Neighboring gene tyrosine-protein kinase CSK-like Neighboring gene N6-Methyl-AMP deaminase Neighboring gene N-acetyltransferase 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in deadenylation-independent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
enhancer of mRNA-decapping protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026225935.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2622593v1 Primary Assembly

Genomic

  1. NW_026571152.1 Reference ASM2622593v1 Primary Assembly

    Range
    21332745..21338264
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020934915.2 → XP_020790574.1  enhancer of mRNA-decapping protein 3

    Conserved Domains (4) summary
    cd01737
    Location:2 → 65
    LSm16_N; Like-Sm protein 16, N-terminal domain
    pfam03853
    Location:272 → 434
    YjeF_N; YjeF-related protein N-terminus
    pfam09532
    Location:170 → 270
    FDF; FDF domain
    pfam16598
    Location:75 → 166
    Edc3_linker; Linker region of enhancer of mRNA-decapping protein 3
Nucleotide Protein
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