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setdb1b SET domain bifurcated histone lysine methyltransferase 1b [ Boleophthalmus pectinirostris (great blue-spotted mudskipper) ]

Gene ID: 110163046, updated on 15-Mar-2024

Summary

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Gene symbol
setdb1b
Gene description
SET domain bifurcated histone lysine methyltransferase 1b
Locus tag
NL108_001192
Gene type
protein coding
RefSeq status
MODEL
Organism
Boleophthalmus pectinirostris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Gobiiformes; Gobioidei; Gobiidae; Oxudercinae; Boleophthalmus
Also known as
setdb1
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM2622593v1 (GCF_026225935.1) Unplaced Scaffold NW_026571447.1 (28973980..28999336)
100 previous assembly BP.fa (GCF_000788275.1) Unplaced Scaffold NW_018355538.1 (1695708..1723435)

NW_026571447.1Genomic Context describing neighboring genes Neighboring gene aryl hydrocarbon receptor nuclear translocator Neighboring gene cortexin domain-containing 1 protein-like Neighboring gene meiotic recombination protein REC8 homolog Neighboring gene dual specificity protein kinase CLK2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K9 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heterochromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA methylation-dependent heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase SETDB1-B
Names
SET domain bifurcated 1
SET domain bifurcated histone lysine methyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026225935.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2622593v1 Primary Assembly

Genomic

  1. NW_026571447.1 Reference ASM2622593v1 Primary Assembly

    Range
    28973980..28999336
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055164253.1 → XP_055020228.1  histone-lysine N-methyltransferase SETDB1-B

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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