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ntn4 netrin 4 [ Boleophthalmus pectinirostris (great blue-spotted mudskipper) ]

Gene ID: 110161578, updated on 15-Mar-2024

Summary

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Gene symbol
ntn4
Gene description
netrin 4
Locus tag
NL108_000670
Gene type
protein coding
RefSeq status
MODEL
Organism
Boleophthalmus pectinirostris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Gobiaria; Gobiiformes; Gobioidei; Gobiidae; Oxudercinae; Boleophthalmus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM2622593v1 (GCF_026225935.1) Unplaced Scaffold NW_026571133.1 (20295627..20310180)
100 previous assembly BP.fa (GCF_000788275.1) Unplaced Scaffold NW_018355106.1 (8611863..8625783)

NW_026571133.1Genomic Context describing neighboring genes Neighboring gene amidohydrolase domain containing 1 Neighboring gene small nuclear ribonucleoprotein polypeptide F Neighboring gene ubiquitin specific peptidase 44 Neighboring gene methionine aminopeptidase 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in basement membrane assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in substrate adhesion-dependent cell spreading IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of laminin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
netrin-4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026225935.1-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM2622593v1 Primary Assembly

Genomic

  1. NW_026571133.1 Reference ASM2622593v1 Primary Assembly

    Range
    20295627..20310180
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020926338.2 → XP_020781997.1  netrin-4

    Conserved Domains (4) summary
    cd00055
    Location:398 → 451
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    pfam00053
    Location:337 → 396
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:44 → 266
    Laminin_N; Laminin N-terminal (Domain VI)
    cl02512
    Location:509 → 620
    NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...
Nucleotide Protein
Heading Accession and Version

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