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SEMA6A semaphorin 6A [ Odocoileus virginianus (white-tailed deer) ]

Gene ID: 110148362, updated on 15-Mar-2024

Summary

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Gene symbol
SEMA6A
Gene description
semaphorin 6A
See related
EnsemblRapid:ENSOVIG00010006338
Gene type
protein coding
RefSeq status
MODEL
Organism
Odocoileus virginianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae; Odocoileus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current Ovir.te_1.0 (GCF_002102435.1) Unplaced Scaffold NW_018336321.1 (292253..418640)

NW_018336321.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110148363 Neighboring gene COMM domain containing 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018336321 Unplaced Scaffold Reference Ovir.te_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative chemotaxis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of neuron migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-6A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odocoileus virginianus texanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ovir.te_1.0 Primary Assembly

Genomic

  1. NW_018336321.1 Reference Ovir.te_1.0 Primary Assembly

    Range
    292253..418640
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020910305.1 → XP_020765964.1  semaphorin-6A isoform X2

    UniProtKB/TrEMBL
    A0A6J0YWH8
    Related
    ENSOVIP00010008820.1, ENSOVIT00010009953.1
    Conserved Domains (2) summary
    cd11266
    Location:48 → 513
    Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
    pfam01437
    Location:514 → 544
    PSI; Plexin repeat

  2. XM_020910302.1 → XP_020765961.1  semaphorin-6A isoform X1

    UniProtKB/TrEMBL
    A0A6J0YW17
    Related
    ENSOVIP00010008813.1, ENSOVIT00010009942.1
    Conserved Domains (2) summary
    cd11266
    Location:48 → 513
    Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
    pfam01437
    Location:514 → 544
    PSI; Plexin repeat

  3. XM_020910306.1 → XP_020765965.1  semaphorin-6A isoform X3

    UniProtKB/TrEMBL
    A0A6J0YVY1
    Related
    ENSOVIP00010008912.1, ENSOVIT00010010056.1
    Conserved Domains (2) summary
    cd11266
    Location:48 → 513
    Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
    pfam01437
    Location:514 → 544
    PSI; Plexin repeat

  4. XM_020910304.1 → XP_020765963.1  semaphorin-6A isoform X1

    UniProtKB/TrEMBL
    A0A6J0YW17
    Conserved Domains (2) summary
    cd11266
    Location:48 → 513
    Sema_6A; The Sema domain, a protein interacting module, of semaphorins 6A (Sema6A)
    pfam01437
    Location:514 → 544
    PSI; Plexin repeat
Nucleotide Protein
Heading Accession and Version

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