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SCYL2 SCY1 like pseudokinase 2 [ Odocoileus virginianus (white-tailed deer) ]

Gene ID: 110143877, updated on 15-Mar-2024

Summary

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Gene symbol
SCYL2
Gene description
SCY1 like pseudokinase 2
See related
EnsemblRapid:ENSOVIG00010012488
Gene type
protein coding
RefSeq status
MODEL
Organism
Odocoileus virginianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae; Odocoileus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current Ovir.te_1.0 (GCF_002102435.1) Unplaced Scaffold NW_018335543.1 (192891..246566)

NW_018335543.1Genomic Context describing neighboring genes Neighboring gene bridge-like lipid transfer protein family member 3B Neighboring gene actin related protein 6 Neighboring gene 60S ribosomal protein L26 pseudogene Neighboring gene DEP domain containing 4 Neighboring gene solute carrier family 17 member 8 Neighboring gene tryptophan hydroxylase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018335543 Unplaced Scaffold Reference Ovir.te_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SCY1-like protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odocoileus virginianus texanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ovir.te_1.0 Primary Assembly

Genomic

  1. NW_018335543.1 Reference Ovir.te_1.0 Primary Assembly

    Range
    192891..246566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020903643.1 → XP_020759302.1  SCY1-like protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A6J0YDN6
    Conserved Domains (5) summary
    cd14011
    Location:38 → 329
    PK_SCY1_like; Pseudokinase domain of Scy1-like proteins
    sd00044
    Location:373 → 403
    HEAT; HEAT repeat [structural motif]
    pfam09606
    Location:774 → 910
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam11593
    Location:681 → 843
    Med3; Mediator complex subunit 3 fungal
    cl25732
    Location:580 → 699
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_020903639.1 → XP_020759298.1  SCY1-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A6J0YC18
    Conserved Domains (5) summary
    cd14011
    Location:38 → 329
    PK_SCY1_like; Pseudokinase domain of Scy1-like proteins
    sd00044
    Location:373 → 403
    HEAT; HEAT repeat [structural motif]
    pfam09606
    Location:778 → 914
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam11593
    Location:685 → 847
    Med3; Mediator complex subunit 3 fungal
    cl25732
    Location:584 → 703
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_020903642.1 → XP_020759301.1  SCY1-like protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A6J0YDU5
    Conserved Domains (4) summary
    cd14011
    Location:38 → 329
    PK_SCY1_like; Pseudokinase domain of Scy1-like proteins
    sd00044
    Location:373 → 403
    HEAT; HEAT repeat [structural motif]
    pfam09606
    Location:777 → 913
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cl25732
    Location:584 → 702
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_020903640.1 → XP_020759299.1  SCY1-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A6J0YC18
    Conserved Domains (5) summary
    cd14011
    Location:38 → 329
    PK_SCY1_like; Pseudokinase domain of Scy1-like proteins
    sd00044
    Location:373 → 403
    HEAT; HEAT repeat [structural motif]
    pfam09606
    Location:778 → 914
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam11593
    Location:685 → 847
    Med3; Mediator complex subunit 3 fungal
    cl25732
    Location:584 → 703
    SMC_N; RecF/RecN/SMC N terminal domain

  5. XM_020903644.1 → XP_020759303.1  SCY1-like protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A6J0YDN6
    Related
    ENSOVIP00010017816.1, ENSOVIT00010020124.1
    Conserved Domains (5) summary
    cd14011
    Location:38 → 329
    PK_SCY1_like; Pseudokinase domain of Scy1-like proteins
    sd00044
    Location:373 → 403
    HEAT; HEAT repeat [structural motif]
    pfam09606
    Location:774 → 910
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam11593
    Location:681 → 843
    Med3; Mediator complex subunit 3 fungal
    cl25732
    Location:580 → 699
    SMC_N; RecF/RecN/SMC N terminal domain

  6. XM_020903641.1 → XP_020759300.1  SCY1-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A6J0YC18
    Related
    ENSOVIP00010017763.1, ENSOVIT00010020069.1
    Conserved Domains (5) summary
    cd14011
    Location:38 → 329
    PK_SCY1_like; Pseudokinase domain of Scy1-like proteins
    sd00044
    Location:373 → 403
    HEAT; HEAT repeat [structural motif]
    pfam09606
    Location:778 → 914
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam11593
    Location:685 → 847
    Med3; Mediator complex subunit 3 fungal
    cl25732
    Location:584 → 703
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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