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PKD1 polycystin 1, transient receptor potential channel interacting [ Odocoileus virginianus (white-tailed deer) ]

Gene ID: 110132833, updated on 15-Mar-2024

Summary

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Gene symbol
PKD1
Gene description
polycystin 1, transient receptor potential channel interacting
See related
EnsemblRapid:ENSOVIG00010023392
Gene type
protein coding
RefSeq status
MODEL
Organism
Odocoileus virginianus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Cervidae; Odocoileinae; Odocoileus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
49
Annotation release Status Assembly Chr Location
100 current Ovir.te_1.0 (GCF_002102435.1) Unplaced Scaffold NW_018343886.1 (1163186..1195420, complement)

NW_018343886.1Genomic Context describing neighboring genes Neighboring gene NHERF family PDZ scaffold protein 2 Neighboring gene nth like DNA glycosylase 1 Neighboring gene TSC complex subunit 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018343886 Unplaced Scaffold Reference Ovir.te_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in kidney development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycystin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Odocoileus virginianus texanus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ovir.te_1.0 Primary Assembly

Genomic

  1. NW_018343886.1 Reference Ovir.te_1.0 Primary Assembly

    Range
    1163186..1195420 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020886382.1 → XP_020742041.1  polycystin-1

    UniProtKB/TrEMBL
    A0A6J0WZG8
    Related
    ENSOVIT00010038227.1
    Conserved Domains (5) summary
    TIGR00864
    Location:328 → 2963
    PCC; polycystin cation channel protein
    smart00303
    Location:3243 → 3292
    GPS; G-protein-coupled receptor proteolytic site domain
    cd01752
    Location:3350 → 3469
    PLAT_polycystin; PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological ...
    sd00031
    Location:324 → 347
    LRR_1; leucine-rich repeat [structural motif]
    cl27887
    Location:3942 → 4346
    PKD_channel; Polycystin cation channel
Nucleotide Protein
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