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gm2a ganglioside GM2 activator [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109995853, updated on 26-Jun-2024

Summary

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Gene symbol
gm2a
Gene description
ganglioside GM2 activator
See related
Ensembl:ENSLBEG00000006452
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
Orthologs
human zebrafish all
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Genomic context

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See gm2a in Genome Data Viewer
Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current fLabBer1.1 (GCF_963930695.1) 9 NC_089203.1 (23320434..23327564)
101 previous assembly BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114757.1 (79552..86673, complement)

Chromosome 9 - NC_089203.1Genomic Context describing neighboring genes Neighboring gene THO complex 3 Neighboring gene shootin 3 Neighboring gene protocadherin 12 Neighboring gene protocadherin-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables enzyme activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasmic side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ganglioside GM2 activator
Names
GM2 ganglioside activator

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963930695.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLabBer1.1

Genomic

  1. NC_089203.1 Reference fLabBer1.1

    Range
    23320434..23327564
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020649721.3 → XP_020505377.1  ganglioside GM2 activator

    UniProtKB/TrEMBL
    A0A3Q3EQ97
    Related
    ENSLBEP00000008347.1
    Conserved Domains (1) summary
    cl00274
    Location:40 → 199
    ML; The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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