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usp12a ubiquitin specific peptidase 12a [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109993574, updated on 26-Jun-2024

Summary

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Gene symbol
usp12a
Gene description
ubiquitin specific peptidase 12a
See related
Ensembl:ENSLBEG00000017748
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
Also known as
usp12
Orthologs
human zebrafish all
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Genomic context

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See usp12a in Genome Data Viewer
Location:
chromosome: 20
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current fLabBer1.1 (GCF_963930695.1) 20 NC_089214.1 (10918618..10925149, complement)
101 previous assembly BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114423.1 (2115899..2122478)

Chromosome 20 - NC_089214.1Genomic Context describing neighboring genes Neighboring gene cyclin dependent kinase 8 Neighboring gene WASP family member 3b Neighboring gene G protein-coupled receptor 12 Neighboring gene ribosomal protein L21 Neighboring gene general transcription factor IIIA, b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 12A
Names
ubiquitin specific peptidase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963930695.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLabBer1.1

Genomic

  1. NC_089214.1 Reference fLabBer1.1

    Range
    10918618..10925149 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020646568.3 → XP_020502224.1  ubiquitin carboxyl-terminal hydrolase 12A

    UniProtKB/TrEMBL
    A0A3Q3FTC6, A0A3Q3MRI7
    Related
    ENSLBEP00000023167.1
    Conserved Domains (1) summary
    cd02663
    Location:40 → 369
    Peptidase_C19G; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
Nucleotide Protein
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