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usb1 U6 snRNA biogenesis 1 [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109991857, updated on 26-Jun-2024

Summary

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Gene symbol
usb1
Gene description
U6 snRNA biogenesis 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current fLabBer1.1 (GCF_963930695.1) 7 NC_089201.1 (12118703..12121751, complement)
101 previous assembly BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114630.1 (104481..107621)

Chromosome 7 - NC_089201.1Genomic Context describing neighboring genes Neighboring gene lecithin-cholesterol acyltransferase Neighboring gene phospholipase A2, group XV Neighboring gene zinc finger protein 319b Neighboring gene casein kinase 2, alpha prime polypeptide b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in U6 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U6 snRNA phosphodiesterase 1
Names
U6 snRNA biogenesis phosphodiesterase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963930695.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLabBer1.1

Genomic

  1. NC_089201.1 Reference fLabBer1.1

    Range
    12118703..12121751 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020644276.3 → XP_020499932.1  U6 snRNA phosphodiesterase 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q3EX39
    Conserved Domains (1) summary
    pfam09749
    Location:56 → 275
    HVSL; Uncharacterized conserved protein

  2. XM_020644277.3 → XP_020499933.1  U6 snRNA phosphodiesterase 1 isoform X2

    Conserved Domains (1) summary
    pfam09749
    Location:14 → 233
    HVSL; Uncharacterized conserved protein
Nucleotide Protein
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