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rcl1 RNA terminal phosphate cyclase-like 1 [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109987108, updated on 1-Aug-2024

Summary

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Gene symbol
rcl1
Gene description
RNA terminal phosphate cyclase-like 1
See related
Ensembl:ENSLBEG00000003957
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 17
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current fLabBer1.1 (GCF_963930695.1) 17 NC_089211.1 (12365224..12375313, complement)
101 previous assembly BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114524.1 (842925..852947, complement)

Chromosome 17 - NC_089211.1Genomic Context describing neighboring genes Neighboring gene ER degradation-enhancing alpha-mannosidase-like protein 3 Neighboring gene annexin A3b Neighboring gene adenylate kinase 3 Neighboring gene cell division cycle 37-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA endonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA 3'-terminal phosphate cyclase-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963930695.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLabBer1.1

Genomic

  1. NC_089211.1 Reference fLabBer1.1

    Range
    12365224..12375313 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020638089.3 → XP_020493745.2  RNA 3'-terminal phosphate cyclase-like protein

    UniProtKB/TrEMBL
    A0A3Q3EDE7
Nucleotide Protein
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Gene LinkOut

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