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snapc3 small nuclear RNA activating complex, polypeptide 3 [ Labrus bergylta (ballan wrasse) ]

Gene ID: 109980529, updated on 26-Jun-2024

Summary

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Gene symbol
snapc3
Gene description
small nuclear RNA activating complex, polypeptide 3
See related
Ensembl:ENSLBEG00000015639
Gene type
protein coding
RefSeq status
MODEL
Organism
Labrus bergylta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Labriformes; Labridae; Labrus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current fLabBer1.1 (GCF_963930695.1) 1 NC_089195.1 (24801815..24807439, complement)
101 previous assembly BallGen_V1 (GCF_900080235.1) Unplaced Scaffold NW_018114436.1 (329073..334814)

Chromosome 1 - NC_089195.1Genomic Context describing neighboring genes Neighboring gene basonuclin zinc finger protein 2 Neighboring gene PC4 and SFRS1 interacting protein 1a Neighboring gene tetratricopeptide repeat protein 39B Neighboring gene DnaJ heat shock protein family (Hsp40) member B14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase III type 3 promoter sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables bent DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables core promoter sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in snRNA transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in snRNA transcription by RNA polymerase III IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of snRNA-activating protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
snRNA-activating protein complex subunit 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_963930695.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fLabBer1.1

Genomic

  1. NC_089195.1 Reference fLabBer1.1

    Range
    24801815..24807439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020628897.3 → XP_020484553.1  snRNA-activating protein complex subunit 3

    UniProtKB/TrEMBL
    A0A3Q3MJA5
    Related
    ENSLBEP00000020335.1
    Conserved Domains (2) summary
    pfam08825
    Location:96 → 155
    E2_bind; E2 binding domain
    pfam12251
    Location:176 → 374
    zf-SNAP50_C; snRNA-activating protein of 50kDa MW C terminal
Nucleotide Protein
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Gene LinkOut

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