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sema5ba sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5Ba [ Monopterus albus (swamp eel) ]

Gene ID: 109974013, updated on 14-Mar-2024

Summary

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Gene symbol
sema5ba
Gene description
sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5Ba
See related
Ensembl:ENSMALG00000002087
Gene type
protein coding
RefSeq status
MODEL
Organism
Monopterus albus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Synbranchidae; Monopterus
Also known as
sema5b
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current M_albus_1.0 (GCF_001952655.1) Unplaced Scaffold NW_018128198.1 (296663..459940, complement)

NW_018128198.1Genomic Context describing neighboring genes Neighboring gene hspb associated protein 1 Neighboring gene solute carrier family 49 member 4 Neighboring gene protein disulfide isomerase family A, member 5 Neighboring gene SEC22 homolog A, vesicle trafficking protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018128198.1 Unplaced Scaffold Reference M_albus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon extension IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-5B
Names
semaphorin 5B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Monopterus albus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_albus_1.0 Primary Assembly

Genomic

  1. NW_018128198.1 Reference M_albus_1.0 Primary Assembly

    Range
    296663..459940 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020623972.1 → XP_020479628.1  semaphorin-5B isoform X1

    UniProtKB/TrEMBL
    A0A3Q3IQM7
    Conserved Domains (3) summary
    smart00209
    Location:806 → 858
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:506 → 553
    PSI; Plexin repeat
    cl15693
    Location:69 → 505
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  2. XM_020623973.1 → XP_020479629.1  semaphorin-5B isoform X2

    UniProtKB/TrEMBL
    A0A3Q3IQJ3, A0A3Q3IQM7
    Related
    ENSMALP00000002801.1, ENSMALT00000002880.1
    Conserved Domains (3) summary
    smart00209
    Location:806 → 858
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:506 → 553
    PSI; Plexin repeat
    cl15693
    Location:69 → 505
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  3. XM_020623969.1 → XP_020479625.1  semaphorin-5B isoform X1

    UniProtKB/TrEMBL
    A0A3Q3IQM7
    Conserved Domains (3) summary
    smart00209
    Location:806 → 858
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:506 → 553
    PSI; Plexin repeat
    cl15693
    Location:69 → 505
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

  4. XM_020623971.1 → XP_020479627.1  semaphorin-5B isoform X1

    UniProtKB/TrEMBL
    A0A3Q3IQM7
    Conserved Domains (3) summary
    smart00209
    Location:806 → 858
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:506 → 553
    PSI; Plexin repeat
    cl15693
    Location:69 → 505
    Sema; The Sema domain, a protein interacting module, of semaphorins and plexins
Nucleotide Protein
Heading Accession and Version

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