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bbx BBX high mobility group box domain containing [ Monopterus albus (swamp eel) ]

Gene ID: 109972018, updated on 14-Mar-2024

Summary

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Gene symbol
bbx
Gene description
BBX high mobility group box domain containing
See related
Ensembl:ENSMALG00000014330
Gene type
protein coding
RefSeq status
MODEL
Organism
Monopterus albus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Synbranchidae; Monopterus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current M_albus_1.0 (GCF_001952655.1) Unplaced Scaffold NW_018128123.1 (114907..144018)

NW_018128123.1Genomic Context describing neighboring genes Neighboring gene holocarboxylase synthetase (biotin-(proprionyl-CoA-carboxylase (ATP-hydrolysing)) ligase) Neighboring gene VPS11 core subunit of CORVET and HOPS complexes Neighboring gene hypoxia up-regulated 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018128123.1 Unplaced Scaffold Reference M_albus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
HMG box transcription factor BBX
Names
BBX, HMG-box containing

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Monopterus albus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_albus_1.0 Primary Assembly

Genomic

  1. NW_018128123.1 Reference M_albus_1.0 Primary Assembly

    Range
    114907..144018
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020620603.1 → XP_020476259.1  HMG box transcription factor BBX isoform X1

    UniProtKB/TrEMBL
    A0A3Q3QUM8
    Related
    ENSMALP00000020486.1, ENSMALT00000020885.1
    Conserved Domains (2) summary
    cd01388
    Location:83 → 154
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:199 → 324
    DUF2028; Domain of unknown function (DUF2028)

  2. XM_020620608.1 → XP_020476264.1  HMG box transcription factor BBX isoform X1

    UniProtKB/TrEMBL
    A0A3Q3QUM8
    Conserved Domains (2) summary
    cd01388
    Location:83 → 154
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:199 → 324
    DUF2028; Domain of unknown function (DUF2028)

  3. XM_020620605.1 → XP_020476261.1  HMG box transcription factor BBX isoform X1

    UniProtKB/TrEMBL
    A0A3Q3QUM8
    Conserved Domains (2) summary
    cd01388
    Location:83 → 154
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:199 → 324
    DUF2028; Domain of unknown function (DUF2028)

  4. XM_020620602.1 → XP_020476258.1  HMG box transcription factor BBX isoform X1

    UniProtKB/TrEMBL
    A0A3Q3QUM8
    Related
    ENSMALP00000020509.1, ENSMALT00000020908.1
    Conserved Domains (2) summary
    cd01388
    Location:83 → 154
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:199 → 324
    DUF2028; Domain of unknown function (DUF2028)

  5. XM_020620609.1 → XP_020476265.1  HMG box transcription factor BBX isoform X2

    Conserved Domains (2) summary
    cd01388
    Location:83 → 154
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:199 → 324
    DUF2028; Domain of unknown function (DUF2028)

  6. XM_020620610.1 → XP_020476266.1  HMG box transcription factor BBX isoform X3

    UniProtKB/TrEMBL
    A0A3Q3QUQ0
    Related
    ENSMALP00000020526.1, ENSMALT00000020926.1
    Conserved Domains (2) summary
    cd01388
    Location:83 → 154
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:199 → 324
    DUF2028; Domain of unknown function (DUF2028)

  7. XM_020620607.1 → XP_020476263.1  HMG box transcription factor BBX isoform X1

    UniProtKB/TrEMBL
    A0A3Q3QUM8
    Conserved Domains (2) summary
    cd01388
    Location:83 → 154
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:199 → 324
    DUF2028; Domain of unknown function (DUF2028)

  8. XM_020620604.1 → XP_020476260.1  HMG box transcription factor BBX isoform X1

    UniProtKB/TrEMBL
    A0A3Q3QUM8
    Conserved Domains (2) summary
    cd01388
    Location:83 → 154
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:199 → 324
    DUF2028; Domain of unknown function (DUF2028)

  9. XM_020620606.1 → XP_020476262.1  HMG box transcription factor BBX isoform X1

    UniProtKB/TrEMBL
    A0A3Q3QUM8
    Conserved Domains (2) summary
    cd01388
    Location:83 → 154
    SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
    pfam09667
    Location:199 → 324
    DUF2028; Domain of unknown function (DUF2028)
Nucleotide Protein
Heading Accession and Version

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