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ddb2 damage-specific DNA binding protein 2 [ Monopterus albus (swamp eel) ]

Gene ID: 109971222, updated on 14-Mar-2024

Summary

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Gene symbol
ddb2
Gene description
damage-specific DNA binding protein 2
See related
Ensembl:ENSMALG00000006510
Gene type
protein coding
RefSeq status
MODEL
Organism
Monopterus albus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Synbranchidae; Monopterus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current M_albus_1.0 (GCF_001952655.1) Unplaced Scaffold NW_018128098.1 (131904..136957, complement)

NW_018128098.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109971220 Neighboring gene kelch repeat and BTB (POZ) domain containing 4 Neighboring gene kinesin family member 23 Neighboring gene TLE family member 3, transcriptional corepressor a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018128098.1 Unplaced Scaffold Reference M_albus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables damaged DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to UV IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Cul4-RING E3 ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA damage-binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Monopterus albus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_albus_1.0 Primary Assembly

Genomic

  1. NW_018128098.1 Reference M_albus_1.0 Primary Assembly

    Range
    131904..136957 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020619331.1 → XP_020474987.1  DNA damage-binding protein 2

    UniProtKB/TrEMBL
    A0A3Q3IUW2
    Related
    ENSMALP00000009139.1, ENSMALT00000009330.1
    Conserved Domains (2) summary
    sd00039
    Location:107 → 147
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:106 → 417
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_020619332.1 → XP_020474988.1  DNA damage-binding protein 2

    UniProtKB/TrEMBL
    A0A3Q3IUW2
    Conserved Domains (2) summary
    sd00039
    Location:107 → 147
    7WD40; WD40 repeat [structural motif]
    cl25539
    Location:106 → 417
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

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