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xab2 XPA binding protein 2 [ Monopterus albus (swamp eel) ]

Gene ID: 109965890, updated on 14-Mar-2024

Summary

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Gene symbol
xab2
Gene description
XPA binding protein 2
See related
Ensembl:ENSMALG00000015280
Gene type
protein coding
RefSeq status
MODEL
Organism
Monopterus albus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Synbranchidae; Monopterus
Orthologs
human zebrafish all
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Genomic context

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See xab2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current M_albus_1.0 (GCF_001952655.1) Unplaced Scaffold NW_018127985.1 (1896299..1902828)

NW_018127985.1Genomic Context describing neighboring genes Neighboring gene myosin heavy chain, fast skeletal muscle Neighboring gene myosin heavy chain, fast skeletal muscle-like Neighboring gene myosin heavy chain, fast skeletal muscle-like Neighboring gene calmodulin regulated spectrin-associated protein family, member 3 Neighboring gene nuclear receptor subfamily 5, group A, member 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018127985.1 Unplaced Scaffold Reference M_albus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in generation of catalytic spliceosome for first transesterification step IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor SYF1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Monopterus albus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_albus_1.0 Primary Assembly

Genomic

  1. NW_018127985.1 Reference M_albus_1.0 Primary Assembly

    Range
    1896299..1902828
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020610270.1 → XP_020465926.1  pre-mRNA-splicing factor SYF1

    UniProtKB/TrEMBL
    A0A3Q3JPX4, A0A3Q3JYU5
    Related
    ENSMALP00000021905.1, ENSMALT00000022326.1
    Conserved Domains (5) summary
    sd00006
    Location:428 → 456
    TPR; TPR repeat [structural motif]
    pfam08424
    Location:25 → 135
    NRDE-2; necessary for RNA interference
    pfam13424
    Location:391 → 457
    TPR_12; Tetratricopeptide repeat
    cl26002
    Location:439 → 613
    TPR_11; TPR repeat
    cl26993
    Location:108 → 627
    Suf; Suppressor of forked protein (Suf)
Nucleotide Protein
Heading Accession and Version

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