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LOC109956832 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 [ Monopterus albus (swamp eel) ]

Gene ID: 109956832, updated on 9-Nov-2023

Summary

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Gene symbol
LOC109956832
Gene description
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1
See related
Ensembl:ENSMALG00000005394
Gene type
protein coding
RefSeq status
MODEL
Organism
Monopterus albus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Synbranchidae; Monopterus
Also known as
smarce1
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current M_albus_1.0 (GCF_001952655.1) Unplaced Scaffold NW_018127902.1 (1917689..1926030, complement)

NW_018127902.1Genomic Context describing neighboring genes Neighboring gene tensin 4 Neighboring gene chemokine (C-C motif) receptor 7 Neighboring gene insulin like growth factor binding protein 4 Neighboring gene uncharacterized LOC109956850 Neighboring gene zinc finger protein Aiolos-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018127902.1 Unplaced Scaffold Reference M_albus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nuclear receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosomal DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SWI/SNF complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Monopterus albus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_albus_1.0 Primary Assembly

Genomic

  1. NW_018127902.1 Reference M_albus_1.0 Primary Assembly

    Range
    1917689..1926030 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020594204.1 → XP_020449860.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X4

    Conserved Domains (1) summary
    cl00478
    Location:298 → 381
    LGT; Prolipoprotein diacylglyceryl transferase

  2. XM_020594202.1 → XP_020449858.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X2

    Conserved Domains (2) summary
    cd01390
    Location:68 → 129
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
    cl00478
    Location:340 → 423
    LGT; Prolipoprotein diacylglyceryl transferase

  3. XM_020594200.1 → XP_020449856.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q3J347
    Related
    ENSMALP00000007597.1, ENSMALT00000007760.1
    Conserved Domains (2) summary
    cd01390
    Location:70 → 131
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
    cl00478
    Location:342 → 425
    LGT; Prolipoprotein diacylglyceryl transferase

  4. XM_020594201.1 → XP_020449857.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X1

    UniProtKB/TrEMBL
    A0A3Q3J347
    Conserved Domains (2) summary
    cd01390
    Location:70 → 131
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
    cl00478
    Location:342 → 425
    LGT; Prolipoprotein diacylglyceryl transferase

  5. XM_020594203.1 → XP_020449859.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 isoform X3

    Conserved Domains (2) summary
    cd01390
    Location:55 → 116
    HMGB-UBF_HMG-box; class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal ...
    cl00478
    Location:327 → 410
    LGT; Prolipoprotein diacylglyceryl transferase
Nucleotide Protein
Heading Accession and Version

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