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stambp STAM binding protein [ Monopterus albus (swamp eel) ]

Gene ID: 109951142, updated on 9-Nov-2023

Summary

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Gene symbol
stambp
Gene description
STAM binding protein
See related
Ensembl:ENSMALG00000020990
Gene type
protein coding
RefSeq status
MODEL
Organism
Monopterus albus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Synbranchidae; Monopterus
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current M_albus_1.0 (GCF_001952655.1) Unplaced Scaffold NW_018128246.1 (181561..191993, complement)

NW_018128246.1Genomic Context describing neighboring genes Neighboring gene protein yippee-like 1 Neighboring gene peptidylprolyl isomerase (cyclophilin)-like 2 Neighboring gene phospholipid-transporting ATPase ID-like Neighboring gene death-associated protein kinase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_018128246.1 Unplaced Scaffold Reference M_albus_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K63-linked deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal-dependent deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein K63-linked deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cleavage furrow IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
STAM-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Monopterus albus Annotation Release 100

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_albus_1.0 Primary Assembly

Genomic

  1. NW_018128246.1 Reference M_albus_1.0 Primary Assembly

    Range
    181561..191993 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020585449.1 → XP_020441105.1  STAM-binding protein isoform X3

    Conserved Domains (4) summary
    cd08066
    Location:265 → 417
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    PRK13729
    Location:131 → 260
    PRK13729; conjugal transfer pilus assembly protein TraB; Provisional
    pfam06102
    Location:79 → 180
    DUF947; Domain of unknown function (DUF947)
    pfam08969
    Location:8 → 116
    USP8_dimer; USP8 dimerisation domain

  2. XM_020585448.1 → XP_020441104.1  STAM-binding protein isoform X2

    Related
    ENSMALP00000030354.1, ENSMALT00000030890.1
    Conserved Domains (4) summary
    cd08066
    Location:265 → 435
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    PRK13729
    Location:131 → 260
    PRK13729; conjugal transfer pilus assembly protein TraB; Provisional
    pfam06102
    Location:79 → 180
    DUF947; Domain of unknown function (DUF947)
    pfam08969
    Location:8 → 116
    USP8_dimer; USP8 dimerisation domain

  3. XM_020585447.1 → XP_020441103.1  STAM-binding protein isoform X1

    Conserved Domains (4) summary
    cd08066
    Location:265 → 417
    MPN_AMSH_like; Mov34/MPN/PAD-1 family
    PRK13729
    Location:131 → 260
    PRK13729; conjugal transfer pilus assembly protein TraB; Provisional
    pfam06102
    Location:79 → 180
    DUF947; Domain of unknown function (DUF947)
    pfam08969
    Location:8 → 116
    USP8_dimer; USP8 dimerisation domain
Nucleotide Protein
Heading Accession and Version

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