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col1a1b collagen, type I, alpha 1b [ Rhincodon typus (whale shark) ]

Gene ID: 109934289, updated on 14-Mar-2024

Summary

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Gene symbol
col1a1b
Gene description
collagen, type I, alpha 1b
See related
EnsemblRapid:ENSRTYG00015015057
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhincodon typus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Rhincodontidae; Rhincodon
Also known as
col1a1
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 30
Exon count:
53
Annotation release Status Assembly Chr Location
101 current sRhiTyp1.1 (GCF_021869965.1) 30 NC_063361.1 (19162832..19188367, complement)
100 previous assembly ASM164234v2 (GCF_001642345.1) Unplaced Scaffold NW_018071377.1 (13312..39521, complement)

Chromosome 30 - NC_063361.1Genomic Context describing neighboring genes Neighboring gene neurabin-2-like Neighboring gene alpha-sarcoglycan-like Neighboring gene transfer RNA glutamine (anticodon UUG) Neighboring gene beta-1,4 N-acetylgalactosaminyltransferase 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen, type I, alpha 1b
Names
collagen type I alpha 1 chain

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhincodon typus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference sRhiTyp1.1

Genomic

  1. NC_063361.1 Reference sRhiTyp1.1

    Range
    19162832..19188367 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020533101.2 → XP_020388690.1  collagen, type I, alpha 1b isoform X2

    Conserved Domains (3) summary
    pfam01391
    Location:233 → 292
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00093
    Location:33 → 88
    VWC; von Willebrand factor type C domain
    pfam01410
    Location:1227 → 1460
    COLFI; Fibrillar collagen C-terminal domain

  2. XM_020533100.2 → XP_020388689.1  collagen, type I, alpha 1b isoform X1

    Related
    ENSRTYP00015023467.1, ENSRTYT00015026080.1
    Conserved Domains (3) summary
    pfam01391
    Location:234 → 293
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00093
    Location:33 → 88
    VWC; von Willebrand factor type C domain
    pfam01410
    Location:1228 → 1461
    COLFI; Fibrillar collagen C-terminal domain
Nucleotide Protein
Heading Accession and Version

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