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usp36 ubiquitin specific peptidase 36 [ Rhincodon typus (whale shark) ]

Gene ID: 109931462, updated on 12-Sep-2024

Summary

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Gene symbol
usp36
Gene description
ubiquitin specific peptidase 36
See related
EnsemblRapid:ENSRTYG00015014162
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhincodon typus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Orectolobiformes; Rhincodontidae; Rhincodon
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 23
Exon count:
24
Annotation release Status Assembly Chr Location
101 current sRhiTyp1.1 (GCF_021869965.1) 23 NC_063354.1 (11731357..11796310, complement)
100 previous assembly ASM164234v2 (GCF_001642345.1) Unplaced Scaffold NW_018065170.1 (43909..107057, complement)

Chromosome 23 - NC_063354.1Genomic Context describing neighboring genes Neighboring gene dynein axonemal heavy chain 17-like Neighboring gene cytohesin 1b Neighboring gene TIMP metallopeptidase inhibitor 2a Neighboring gene soluble calcium-activated nucleotidase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 36

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhincodon typus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference sRhiTyp1.1

Genomic

  1. NC_063354.1 Reference sRhiTyp1.1

    Range
    11731357..11796310 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048610798.1 → XP_048466755.1  ubiquitin carboxyl-terminal hydrolase 36 isoform X2

  2. XM_020530763.2 → XP_020386352.2  ubiquitin carboxyl-terminal hydrolase 36 isoform X1

    Related
    ENSRTYP00015022027.1, ENSRTYT00015024474.1

  3. XM_048610799.1 → XP_048466756.1  ubiquitin carboxyl-terminal hydrolase 36 isoform X3

  4. XM_020530764.2 → XP_020386353.1  ubiquitin carboxyl-terminal hydrolase 36 isoform X3

    Conserved Domains (1) summary
    cd02661
    Location:120 → 420
    Peptidase_C19E; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...

  5. XM_048610800.1 → XP_048466757.1  ubiquitin carboxyl-terminal hydrolase 36 isoform X3

Nucleotide Protein
Heading Accession and Version

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